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deseq2 multifactor interaction term gender effect 3-factors

updated 4.1 years ago by Michael Love 40k • written 4.1 years ago by kmu004 ▴ 50

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deseq2 interaction term

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deseq2 interaction term

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deseq2 extracting contrasts rnaseq interaction term

updated 4.9 years ago by swbarnes2 ★ 1.2k • written 4.9 years ago by Amit Indap ▴ 10

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deseq2 lfcshrink interaction term

updated 5.0 years ago by Michael Love 40k • written 5.0 years ago by krutherford • 0

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deseq2 interaction term multiple groups betaprior

updated 5.1 years ago by Michael Love 40k • written 5.1 years ago by tarun2 • 0

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deseq2 multiple factor design interaction term

updated 5.2 years ago by Michael Love 40k • written 5.2 years ago by Giovanni Bacci • 0

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deseq2 design interaction term R

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deseq2 ANOVA design interaction term

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deseq2 sva interaction term grouping variable deseq

5.3 years ago kevin.kingsland ▴ 60

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deseq2 interaction term

updated 5.7 years ago by Michael Love 40k • written 5.7 years ago by sofiagreen72211 ▴ 10

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deseq2 multiple factor design nested design interaction term

updated 6.0 years ago by Michael Love 40k • written 6.0 years ago by zahra.aboukhalil • 0

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deseq2 deseq limma interaction term

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Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k

PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would to the job.

Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k

> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …

Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl by ansleyharralson • 0

Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth thank you, yes, please find the targets frame below. Basically, I want to create a design matrix and binarize by 0 and 1 to be…

Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli ▴ 50

answered in Biostars: https://www.biostars.org/p/9564943/

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Answer: Question on constructing design matrix and defining contrasts for analysis

WGCNA: many over and under-expressed features in modules of a signed network

Comment: WGCNA: many over and under-expressed features in modules of a signed network

Answer: DESeq2 or edgeR for Presence and Absence of Proteins

Answer: Normalized counts from LRT or Wald test?

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Teacher to James W. MacDonald 63k