Bioconductor Interaction term

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deseq2 design interaction term R

written 7.2 years ago by briverog • 0

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deseq2 multifactor interaction term gender effect 3-factors

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by kmu004 ▴ 50

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deseq2 interaction term

6.6 years ago guipagui • 0

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deseq2 interaction term

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by Cece • 0

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deseq2 extracting contrasts rnaseq interaction term

updated 6.8 years ago by swbarnes2 ★ 1.4k • written 6.8 years ago by Amit Indap ▴ 10

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deseq2 lfcshrink interaction term

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by krutherford • 0

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deseq2 interaction term multiple groups betaprior

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by tarun2 • 0

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deseq2 multiple factor design interaction term

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by Giovanni Bacci • 0

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deseq2 ANOVA design interaction term

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by tarun2 • 0

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deseq2 sva interaction term grouping variable deseq

7.2 years ago kevin.kingsland ▴ 70

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deseq2 interaction term

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by sofiagreen72211 ▴ 10

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deseq2 multiple factor design nested design interaction term

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by zahra.aboukhalil • 0

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deseq2 deseq limma interaction term

updated 8.0 years ago by Simon Anders ★ 3.8k • written 8.0 years ago by sbcn ▴ 80

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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k

All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…

Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k

> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…

Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k