Showing : intersect • reset
5
votes
2
replies
572
views
Intersecting two big dataframe
genomicrange intersect
updated 4.2 years ago by 66k • written 4.2 years ago by ▴ 30
0
votes
2
replies
916
views
feel confused when identifying overlapping regions by intersect method
GenomicRanges overlaps intersect
updated 5.3 years ago by ★ 11k • written 5.3 years ago by • 0
5
votes
9
replies
9.5k
views
subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges bedtools intersect
updated 5.8 years ago by ▴ 70 • written 5.8 years ago by ▴ 670
2
votes
8
replies
5.4k
views
GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges overlap intersect findoverlaps
6.4 years ago Caroline Grisbach Meissner ▴ 10
0
votes
1
reply
916
views
intersect ranges from a GAlignment object with a GRangesList
intersect grangeslist galignment
updated 7.1 years ago by 16k • written 7.1 years ago by • 0
3
votes
5
replies
1.6k
views
Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect
updated 7.9 years ago by ★ 13k • written 7.9 years ago by ▴ 110
6
votes
2
replies
4.8k
views
How to get the intersect and get the difference of a grange object while keeping meta data
genomicranges intersect
updated 8.0 years ago by 3.9k • written 8.1 years ago by ▴ 30
0
votes
4
replies
3.4k
views
[Solved]Preserve metadata column for retrieving common regions from two GRanges objects
granges intersect
8.3 years ago Jurat Shahidin ▴ 80
0
votes
9
replies
2.7k
views
IRanges: reduce(), findOverlaps(), and intersect() by group
iranges findoverlaps intersect group
8.5 years ago pesquivel • 0
9 results • Page 1 of 1
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Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
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The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Votes
Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
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