Showing : intersect • reset
5
votes
2
replies
707
views
Intersecting two big dataframe
genomicrange intersect
updated 5.0 years ago by 68k • written 5.0 years ago by ▴ 30
0
votes
2
replies
1.1k
views
feel confused when identifying overlapping regions by intersect method
GenomicRanges overlaps intersect
updated 6.1 years ago by ★ 11k • written 6.1 years ago by • 0
5
votes
9
replies
12k
views
subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges bedtools intersect
updated 6.6 years ago by ▴ 70 • written 6.6 years ago by ▴ 670
2
votes
8
replies
6.0k
views
GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges overlap intersect findoverlaps
7.2 years ago Caroline Grisbach Meissner ▴ 10
0
votes
1
reply
1.1k
views
intersect ranges from a GAlignment object with a GRangesList
intersect grangeslist galignment
updated 7.9 years ago by 16k • written 7.9 years ago by • 0
3
votes
5
replies
1.9k
views
Extract coordinates of overlapping genomic intervals
genomicranges findoverlaps intersect
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 110
6
votes
2
replies
5.2k
views
How to get the intersect and get the difference of a grange object while keeping meta data
genomicranges intersect
updated 8.8 years ago by 4.1k • written 8.9 years ago by ▴ 30
0
votes
4
replies
3.7k
views
[Solved]Preserve metadata column for retrieving common regions from two GRanges objects
granges intersect
9.0 years ago Jurat Shahidin ▴ 80
0
votes
9
replies
3.1k
views
IRanges: reduce(), findOverlaps(), and intersect() by group
iranges findoverlaps intersect group
9.3 years ago pesquivel • 0
9 results • Page 1 of 1
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Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.
Comment: Package developing and interoperation with Bioconductor by slizchap • 0
Thank you so much for your answer, very useful!
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k
Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…
Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k
The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…
Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k
Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…
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Comment: ComBat with repeated measures
Answer: Package developing and interoperation with Bioconductor
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
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