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junctionseq
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
4.0 years ago • updated 3.9 years ago
n.tear
▴ 20
0
votes
1
reply
1.0k
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
5.2 years ago
stuart
▴ 10
0
votes
1
reply
965
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
7.8 years ago
rachelrodgers12
• 0
0
votes
0
replies
976
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
8.0 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
1.1k
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
8.0 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.6k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 8.2 years ago by
Steve Lianoglou
★ 13k • written 8.2 years ago by
l.frank
• 0
0
votes
0
replies
964
views
Problems running JunctionSeq
junctionseq
8.3 years ago
jbono
▴ 10
0
votes
0
replies
1.0k
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
8.3 years ago
stuart
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Thank you
Answer: Pathview visualisation not including positive log2 fold changes
by
James W. MacDonald
68k
Without providing a self-contained example, nobody can tell you if/where you went wrong. Since you get a KEGG pathway with some of the gene…
Comment: Differential variance analysis - can i use deseq2
by
Marwan
• 0
Thanks Michael for your answer, i didnt mean to use Deseq2 directly for the variance testing, but more like asking if using the (VST) data…
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Votes
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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