Bioconductor Kegga

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1.4k

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limma goana kegga

updated 5.2 years ago by Gordon Smyth 51k • written 5.2 years ago by Ahdee ▴ 50

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2.0k

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kegga limma pathway analysis kegg

updated 5.6 years ago by Gordon Smyth 51k • written 5.6 years ago by Raito92 ▴ 60

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1.3k

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edgeR kegga KEGG

updated 6.3 years ago by James W. MacDonald 67k • written 6.3 years ago by bernsmq • 0

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2.2k

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limma kegga orgdb

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by baus87 • 0

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2.7k

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edger goana kegga

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by jfreixas • 0

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3.0k

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topgo edger limma kegga kegg

updated 7.2 years ago by Gordon Smyth 51k • written 7.2 years ago by mictadlo ▴ 10

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1.6k

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limma missMethyl gometh goana kegga

updated 7.4 years ago by Gordon Smyth 51k • written 7.5 years ago by Jenny Drnevich ★ 2.0k

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1.6k

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edger kegga

updated 7.4 years ago by Gordon Smyth 51k • written 7.4 years ago by cronanz • 0

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4.8k

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kegga

updated 8.0 years ago by Gordon Smyth 51k • written 8.0 years ago by mat149 ▴ 80

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limma kegga

updated 8.1 years ago by Gordon Smyth 51k • written 8.1 years ago by miyakokodama • 0

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edgeR limma annotationhub kegga annotationdbi

updated 8.4 years ago by cagenet34 ▴ 20 • written 8.7 years ago by Rinaldo Bertossa ▴ 20

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4.3k

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edger kegga keggrest

8.9 years ago Likai Mao ▴ 40

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5.2k

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limma kegga goanna

updated 8.9 years ago by Gordon Smyth 51k • written 8.9 years ago by Guido Hooiveld ★ 4.1k

13 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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