Bioconductor Kegga

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1.7k

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limma goana kegga

updated 6.0 years ago by Gordon Smyth 53k • written 6.0 years ago by Ahdee ▴ 60

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2.3k

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kegga limma pathway analysis kegg

updated 6.4 years ago by Gordon Smyth 53k • written 6.4 years ago by Raito92 ▴ 60

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2.0k

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edgeR kegga KEGG

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by bernsmq • 0

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2.5k

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limma kegga orgdb

updated 7.6 years ago by Gordon Smyth 53k • written 7.6 years ago by baus87 • 0

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3.0k

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edger goana kegga

updated 7.6 years ago by Gordon Smyth 53k • written 7.6 years ago by jfreixas • 0

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3.3k

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topgo edger limma kegga kegg

updated 8.1 years ago by Gordon Smyth 53k • written 8.1 years ago by mictadlo ▴ 10

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1.9k

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limma missMethyl gometh goana kegga

updated 8.2 years ago by Gordon Smyth 53k • written 8.4 years ago by Jenny Drnevich ★ 2.0k

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1.8k

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edger kegga

updated 8.3 years ago by Gordon Smyth 53k • written 8.3 years ago by cronanz • 0

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5.3k

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kegga

updated 8.9 years ago by Gordon Smyth 53k • written 8.9 years ago by mat149 ▴ 80

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2.4k

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limma kegga

updated 8.9 years ago by Gordon Smyth 53k • written 9.0 years ago by miyakokodama • 0

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7.0k

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edgeR limma annotationhub kegga annotationdbi

updated 9.2 years ago by cagenet34 ▴ 20 • written 9.5 years ago by Rinaldo Bertossa ▴ 20

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5.0k

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edger kegga keggrest

9.7 years ago Likai Mao ▴ 40

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5.8k

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limma kegga goanna

updated 9.7 years ago by Gordon Smyth 53k • written 9.7 years ago by Guido Hooiveld ★ 4.1k

13 results • Page 1 of 1

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Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Hello again @gordonsmyth, I've now applied the analysis using a more detailed annotation of cell types/clusters, which includes about 100 …

Votes

Answer: ordinary t from limma [was: How would I normally compare swirl?]

Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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