Bioconductor Kegga

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1.7k

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limma goana kegga

updated 5.9 years ago by Gordon Smyth 52k • written 5.9 years ago by Ahdee ▴ 60

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2.3k

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kegga limma pathway analysis kegg

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by Raito92 ▴ 60

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edgeR kegga KEGG

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by bernsmq • 0

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2.5k

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limma kegga orgdb

updated 7.5 years ago by Gordon Smyth 52k • written 7.5 years ago by baus87 • 0

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edger goana kegga

updated 7.6 years ago by Gordon Smyth 52k • written 7.6 years ago by jfreixas • 0

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topgo edger limma kegga kegg

updated 8.0 years ago by Gordon Smyth 52k • written 8.0 years ago by mictadlo ▴ 10

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1.8k

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limma missMethyl gometh goana kegga

updated 8.1 years ago by Gordon Smyth 52k • written 8.3 years ago by Jenny Drnevich ★ 2.0k

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1.8k

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edger kegga

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by cronanz • 0

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5.3k

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kegga

updated 8.8 years ago by Gordon Smyth 52k • written 8.8 years ago by mat149 ▴ 80

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limma kegga

updated 8.9 years ago by Gordon Smyth 52k • written 8.9 years ago by miyakokodama • 0

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edgeR limma annotationhub kegga annotationdbi

updated 9.2 years ago by cagenet34 ▴ 20 • written 9.5 years ago by Rinaldo Bertossa ▴ 20

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edger kegga keggrest

9.7 years ago • updated 9.6 years ago Likai Mao ▴ 40

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5.7k

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limma kegga goanna

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by Guido Hooiveld ★ 4.1k

13 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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Popular Question to Robert Castelo ★ 3.4k