Bioconductor L

Showing : l • reset

0

votes

1

reply

825

views

DESeq2 l

updated 2.2 years ago by Michael Love 43k • written 2.2 years ago by Paula • 0

4

votes

8

replies

2.1k

views

l DESeq2

updated 3.4 years ago by ariel ▴ 20 • written 3.6 years ago by aedavids ▴ 20

0

votes

0

replies

980

views

MEDIPS edgeR l

3.7 years ago Aranzazu • 0

0

votes

1

reply

1.5k

views

TCGAbiolinks data normalize l

updated 3.8 years ago by Kevin Blighe ★ 4.0k • written 3.8 years ago by DANIELA • 0

4 results • Page 1 of 1

Recent ...

Replies

Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

Votes

Comment: Heatmap of a transformed deseq object with pheatmap

DESeq2: Question about the alpha in summary() and results()

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Awards • All