Biostar Normalize

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TCGAbiolinks data normalize l

updated 9 months ago by Kevin Blighe 3.5k • written 9 months ago by DANIELA • 0

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scater scran singlecellexperiment normalize qc

updated 7 weeks ago by Dayme • 0 • written 3.1 years ago by kushshah ▴ 10

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normalization normalize cell

4.0 years ago bhgyu ▴ 30

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967

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atac-seq sample size Peak Normalize

4.3 years ago jaime.alvarez.benayas • 0

4 results • Page 1 of 1

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Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by chrarnold • 0

Thanks a lot for your quick reply, it is very appreciated! Indeed, with your 2 suggested modifications, I can again reproduce the results f…

Answer: DiffBind: 0 consensus peaks for dba.peakset: New bug / undocumented change intro by Rory Stark ★ 4.4k

The object in the `.rds` file, `sampleMetaData.df`, is already a `DBA` object, with eight samples: > sampleMetaData.df <- readRDS("~/D…

Comment: Variance explained (coefficient of determination) in edgeR by Gemma • 0

Both strategies actually lead to the same results. Resolved, thanks!

Comment: MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repositor by Laurent Gatto 1.5k

Yes, indeed, if you have local files, you can provide their full path as input to the `openMSfile()` function. This is also what happens in…

Comment: MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repositor by gianluigi.caltabiano • 0

Hello, I have the same exact problem. I am doing a tutorial about Quantitative Proteomics using rpx to import data an PXDataset keep givin…

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Answer: DESeq2: Extracting Averaged Counts Information from dds and rld

Answer: Variance explained (coefficient of determination) in edgeR

Comment: cellCounts() function floating point error

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