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deseq2 machine sizing best practices for very large data set
l
DESeq2
updated 2.4 years ago by
ariel
▴ 20 • written 2.6 years ago by
aedavids
▴ 20
0
votes
1
reply
1.1k
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Help With TCGAbiolinks package
TCGAbiolinks
data
normalize
l
updated 2.8 years ago by
Kevin Blighe
★ 3.9k • written 2.8 years ago by
DANIELA
• 0
0
votes
1
reply
559
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DeSeq2 time series data
DESeq2
l
updated 14 months ago by
Michael Love
41k • written 14 months ago by
Paula
• 0
0
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0
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741
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MEDIPS.meth output
MEDIPS
edgeR
l
2.6 years ago
Aranzazu
• 0
4 results • Page
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Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
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Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
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