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lfcThreshold
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0
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4
replies
2.4k
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DESeq2 lfcThreshold - all my padj are equal to 1
DESeq2
lfcThreshold
3.2 years ago
Abir.khazaal
▴ 10
1
vote
2
replies
3.0k
views
DEseq2 anlysis - LfcThreshold and Lfcshrink options
lfcshrink
DESeq2
RNASeq
lfcthreshold
3.4 years ago
ClaudiaE
• 0
0
votes
5
replies
3.0k
views
Deseq2, lfcThreshold .
ashr
Deseq2
lfcThreshold
updated 4.1 years ago by
Michael Love
43k • written 5.6 years ago by
Iryna
• 0
27
votes
17
replies
9.9k
views
DESeq2 1.20.0 lfcshrink function
deseq2
differential expression
logfoldchange
lfcshrink
lfcthreshold
updated 4.5 years ago by
Michael Love
43k • written 7.4 years ago by
emi.sch
▴ 50
0
votes
1
reply
1.5k
views
DESeq2 - shrunken log fold changes and threshold test
deseq2
lfcshrink
lfcthreshold
differential gene expression
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
corentinrichard374369
• 0
1
vote
2
replies
2.9k
views
[DESeq2] Results summary indicates LFC > and < 0 even with changed lfcThreshold
DESeq2
lfcThreshold
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
Mike
▴ 10
9
votes
2
replies
6.9k
views
log fold change threshold in Deseq2 - using lfcthreshold
lfcthreshold
deseq2
updated 7.9 years ago by
Michael Love
43k • written 7.9 years ago by
lirongrossmann
▴ 80
2
votes
1
reply
3.7k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2
microrna
lfcThreshold
stable expression
ffpe
updated 10.1 years ago by
Michael Love
43k • written 10.1 years ago by
mariakarand
▴ 20
8 results • Page
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by
Guido Hooiveld
★ 4.1k
It seems that through the Internet Archive these files can be obtained: https://web.archive.org/web/20240710102334/http://brainarray.mbn…
Comment: Getting a large intercept with DESeq2
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Denise
• 0
Hi, Thank you very much, James and Michael, for getting back to me! I noticed the large intercept when plotting the coefficients returned …
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shepherl
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Yes and we are working on getting the updated windows binaries distributed asap! We are hopeful by the end of this week
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shepherl
4.2k
We apologize for their unresponsiveness; you could try posting your question here to see if anyone in the community could assist in the me…
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by
fabio.marroni
• 0
I am answering my own question. I found the solution thanks to [this post][1], and I am writing here the very simple procedure: 1) Instal…
Votes
Comment: Error installing Seqinfo
Answer: replace cat with message in glmTreat when lfc = 0
Answer: replace cat with message in glmTreat when lfc = 0
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