Bioconductor LfcThreshold

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2.6k

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DESeq2 lfcThreshold

3.4 years ago • updated 3.3 years ago Abir.khazaal ▴ 10

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3.2k

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lfcshrink DESeq2 RNASeq lfcthreshold

3.5 years ago ClaudiaE • 0

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3.1k

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ashr Deseq2 lfcThreshold

updated 4.3 years ago by Michael Love 43k • written 5.7 years ago by Iryna • 0

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10k

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deseq2 differential expression logfoldchange lfcshrink lfcthreshold

updated 4.6 years ago by Michael Love 43k • written 7.6 years ago by emi.sch ▴ 50

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1.5k

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deseq2 lfcshrink lfcthreshold differential gene expression

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by corentinrichard374369 • 0

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DESeq2 lfcThreshold

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by Mike ▴ 10

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7.0k

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lfcthreshold deseq2

updated 8.0 years ago by Michael Love 43k • written 8.0 years ago by lirongrossmann ▴ 80

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3.7k

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deseq2 microrna lfcThreshold stable expression ffpe

updated 10.2 years ago by Michael Love 43k • written 10.2 years ago by mariakarand ▴ 20

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Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k

Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…

Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10

Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…

Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k

Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…

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A: What is logFC and "B" in methylation analysis ??

limma moderated t-statistics and B-statistics

Comment: Guitar R package requires update due to dependency GenomicFeatures

A: how to control age and gender effect in expression data using DESeq2

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