Showing : limma contrast matrix • reset
2
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15
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2.2k
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limma: how to use pairing and adjust for covariates
limma limma-voom limma paired analysis limma contrast matrix
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 10
2
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8
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3.6k
views
limma interaction contrasts
limma contrast matrix limma design matrix limma
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 20
1
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6
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2.5k
views
Multiple testing limma contrasts
limma limma voom limma contrast matrix multiple testing correction
updated 5.9 years ago by 62k • written 5.9 years ago by ▴ 10
1
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5
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813
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Question about contrast matrix using limma
limma rna-seq limma contrast matrix
updated 6.8 years ago by 47k • written 6.8 years ago by • 0
1
vote
5
replies
1.3k
views
Limma: paired multifactor analysis
limma limma design matrix limma contrast matrix limma paired analysis limma-voom
updated 6.0 years ago by 47k • written 6.0 years ago by ▴ 10
3
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5
replies
1.6k
views
Limma-voom contrast confusion
limma limma voom limma design matrix limma contrast matrix limma paired analysis
updated 6.0 years ago by ★ 28k • written 6.0 years ago by ▴ 10
3
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4
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6.2k
views
edgeR design matrix and contrasts: how to make contrast between groups that aren't shown in the design matrix columns?
edger design and contrast matrix contrast limma contrast matrix limma
updated 5.0 years ago by 47k • written 5.0 years ago by ▴ 20
1
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4
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886
views
Methylation EPIC annotation - the logFC values represented as boxplots
probe to gene id logFC illuminahumanmethylationepicanno.ilm10b2.hg19 limma contrast matrix
updated 4.8 years ago by 62k • written 4.8 years ago by • 0
7
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4
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2.6k
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Limma contrast for variables disease, gender and age
limma design matrix limma limma contrast matrix microarrays
6.6 years ago miyuki_iii ▴ 10
2
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4
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6.2k
views
Limma design and contrast matrix
limma limma design matrix limma contrast matrix
6.9 years ago donny.dw • 0
0
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4
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959
views
contrast matrix design for a comparison (trend) of drug concentrations
limma contrast matrix affymetrix microarrays limma
updated 6.2 years ago by ★ 28k • written 6.2 years ago by ▴ 840
4
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3
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2.7k
views
limma: model/contrast matrix for 2x3 factorial design
limma multifactorial design design and contrast matrix limma design matrix limma contrast matrix
updated 6.8 years ago by 47k • written 6.8 years ago by • 0
5
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3
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1.6k
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Correct contrast for testing multi-level interaction effect in limma using combined factors design matrix
limma contrast matrix limma design matrix limma rna-seq limma voom
updated 5.8 years ago by ★ 28k • written 5.8 years ago by • 0
3
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2
replies
761
views
Creating a correct limma model with respect to contrast matrix and design matrix
limma limma contrast matrix limma design matrix
updated 4.4 years ago by ★ 28k • written 4.4 years ago by • 0
1
vote
2
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1.0k
views
Limma design matrix for three-treatment crossover study
limma design matrix limma limma contrast matrix crossover study
updated 6.3 years ago by ★ 28k • written 6.3 years ago by ▴ 10
0
votes
2
replies
608
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Help with limma contrast/design matrices
limma contrast matrix
6.2 years ago mat149 ▴ 70
16 results • Page 1 of 1
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Comment: Not able to download recount3 data by Niveditha ▴ 10
Not sure if this is a issue for which I need to create a ticket in the github link provided in the previous comment. Request you to confirm
Comment: Not able to download recount3 data by Niveditha ▴ 10
CURL command - curl https://www.sciserver.org/public-data/recount3/data/human/homes_index CURL command Works in the system with the follow…
Comment: Mutect version, matched normal and manual curation in PureCN by Ken C • 0
Hi Markus, Thanks for your previous help. I now have a particular question that I believe is related to manual curation of PureCN results,…
Comment: TPP2D - multicore computing for bootstrapNullAlternativeModel(...) by Tobias ▴ 40
I found a way that worked on my MacBook Pro and also on a Linux (Debian 10): ``` ##### multicore version ##### library(BiocParallel) null_…
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...) by James W. MacDonald 62k
You are already halfway to figuring this out for yourself. Here's how I would proceed. The argument 'BPPARAM' says something about 'opti…
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C: Batch correction in DESeq2
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
Why in Bioconductor community people rarely upvote questions?
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
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