Showing : lumi • reset
3
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9
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7.2k
views
Illumina Expression analysis from iDAT files
beadarray lumi illuminaio idat
updated 3.8 years ago by 53k • written 11.9 years ago by 21k
0
votes
10
replies
2.9k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 11.9 years ago by ★ 4.2k • written 11.9 years ago by ▴ 190
0
votes
2
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4.8k
views
Annotate - gene name to ENSEMBL
Microarray GO lumi Microarray GO lumi
updated 11.9 years ago by ▴ 400 • written 11.9 years ago by ▴ 180
0
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0
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1.2k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi convert lumi methylumi
11.9 years ago Allegra Petti ▴ 120
0
votes
3
replies
2.0k
views
mifi unable to install by bioLite
lumi lumi
updated 12.0 years ago by ★ 4.2k • written 12.0 years ago by ▴ 30
0
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0
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1.1k
views
variation between chips - neqc()
Microarray Normalization probe limma lumi Microarray Normalization probe limma lumi
12.0 years ago Rao,Xiayu ▴ 550
0
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1
reply
2.4k
views
Control probe QC plots for Infinium 450k chips (lumi, minfi...)
Annotation probe lumi minfi Annotation probe lumi minfi
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 90
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0
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1.2k
views
GenomeStudio output and lumi
lumi lumi
12.1 years ago Sanja Rogic ▴ 10
0
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2
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2.1k
views
Reading Illumina data from GenomeStudio in limma
probe lumi probe lumi
updated 12.1 years ago by ★ 3.6k • written 12.1 years ago by ★ 13k
0
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1
reply
1.8k
views
problem with 'FDb.InfiniumMethylation.hg19'
BSgenome BSgenome lumi methylumi BSgenome BSgenome lumi methylumi
updated 12.3 years ago by ▴ 120 • written 12.3 years ago by 68k
0
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2
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1.7k
views
lumiR returns ExpressionSet object instead of LumiBatch
GO Mus musculus BSgenome BSgenome lumi GO Mus musculus BSgenome BSgenome lumi
updated 12.3 years ago by ▴ 440 • written 12.3 years ago by ★ 13k
0
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4
replies
1.2k
views
proper way to handle small changes from different package versions
lumi lumi
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 360
0
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0
replies
1.5k
views
How do I background correct an Illumina eset without using lumiB
Microarray probe limma PROcess convert beadarray lumi Microarray probe limma PROcess
12.4 years ago Gordon Smyth 53k
0
votes
1
reply
1.6k
views
How do I background correct an Illumina eset without using lumiB?
Microarray probe PROcess convert beadarray lumi Microarray probe PROcess convert lumi
updated 12.4 years ago by ▴ 440 • written 12.4 years ago by ★ 13k
0
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0
replies
2.2k
views
how to use MethyLumiM object in BMIQ(wateRmelon)
lumi methylumi lumi methylumi
12.5 years ago Guest User ★ 13k
0
votes
1
reply
1.1k
views
Pre-processing and probe removal in lumi
lumi lumi
updated 12.6 years ago by ▴ 480 • written 12.6 years ago by ▴ 30
0
votes
1
reply
4.5k
views
Problem installing packages on new R
limma beadarray lumi arrayMvout limma beadarray lumi arrayMvout
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 10
0
votes
0
replies
1.4k
views
importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
12.7 years ago Pan Du ▴ 440
0
votes
0
replies
745
views
lumi NuID to UCSC, for example "xl5dFtdFTQCRSSkbwc" to something like "uc002qsd.4"
lumi lumi
12.8 years ago Fenton Christopher Graham ▴ 90
0
votes
2
replies
2.1k
views
arrayQualityMetrics and lumi - failure to load in R2.15.1 windows
lumi arrayQualityMetrics lumi arrayQualityMetrics
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 480
0
votes
5
replies
1.8k
views
gdata affects LumiBatch::combine method
lumi lumi
updated 13.0 years ago by 25k • written 13.0 years ago by ▴ 910
0
votes
2
replies
1.6k
views
Generating GEO submission files from beadarray summary data
beadarray lumi PROMISE beadarray lumi PROMISE
updated 13.0 years ago by ★ 1.1k • written 13.0 years ago by ★ 4.2k
0
votes
2
replies
1.5k
views
Error, while using produceGEOSampleInfoTemplate
beadarray lumi PROMISE beadarray lumi PROMISE
updated 13.0 years ago by ★ 4.2k • written 13.0 years ago by ▴ 350
0
votes
3
replies
2.4k
views
problems installing lumi
lumi lumi
updated 13.1 years ago by ▴ 440 • written 13.1 years ago by ▴ 110
0
votes
1
reply
1.0k
views
lumi - Heatmap
lumi lumi
updated 13.1 years ago by 21k • written 13.1 years ago by ▴ 350
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4
replies
1.5k
views
#Identify differentially expressed genes
limma lumi limma lumi
updated 13.1 years ago by 53k • written 13.1 years ago by ▴ 350
0
votes
4
replies
3.5k
views
Error : package slot missing from signature for generic
Biobase lumi oligoClasses Biobase lumi oligoClasses
13.2 years ago Mark Cowley ▴ 910
0
votes
0
replies
1.1k
views
lumi - limma - geneSymbol and geneName N/A
limma lumi limma lumi
13.2 years ago Paolo Kunderfranco ▴ 350
0
votes
1
reply
1.0k
views
lumi - limma - geneSymbol/geneName
limma lumi limma lumi
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 350
0
votes
1
reply
1.6k
views
lumi - construct a design matrix
lumi CMA lumi CMA
updated 13.2 years ago by ▴ 260 • written 13.2 years ago by ▴ 350
0
votes
3
replies
1.7k
views
Simple conceptual question
Normalization lumi Normalization lumi
updated 13.2 years ago by ▴ 380 • written 13.2 years ago by ▴ 440
0
votes
0
replies
724
views
Question about lumiMethyN() in lumi package
probe lumi probe lumi
13.3 years ago Pan Du ▴ 440
0
votes
0
replies
1.1k
views
output from "getChipInfo" prevents Illumina ProbeID conversion
Annotation Normalization convert lumi Annotation Normalization convert lumi
13.3 years ago Pan Du ▴ 440
0
votes
0
replies
1.5k
views
Illumina beadarray analysis with lumi
Normalization Preprocessing probe PROcess beadarray lumi Normalization Preprocessing probe
13.5 years ago Ahmet ZEHIR ▴ 50
0
votes
0
replies
999
views
Question about Infinium Methylation normalization using lumi package
Normalization probe lumi Normalization probe lumi
13.5 years ago Pan Du ▴ 440
0
votes
1
reply
1.0k
views
Question about using lumi package
Cancer lumi Cancer lumi
updated 13.5 years ago by ▴ 440 • written 13.5 years ago by ▴ 10
0
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0
replies
1.3k
views
Bioconductor Digest, Vol 110, Issue 11
Normalization Cancer lumi methylumi Normalization Cancer lumi methylumi
13.5 years ago Pan Du ▴ 440
0
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0
replies
1.2k
views
Help with lumi R package
Microarray lumi Microarray lumi
13.5 years ago Minyue Wang ▴ 10
0
votes
3
replies
1.4k
views
some questions about lumi package and Illumina arrays
Normalization probe limma lumi Normalization probe limma lumi
updated 13.5 years ago by ★ 3.6k • written 13.5 years ago by ▴ 840
0
votes
0
replies
862
views
Get negative control probes in lumiBarnes data set
beadarray lumi beadarray lumi
13.5 years ago Guest User ★ 13k
0
votes
1
reply
1.2k
views
LumiT VST error
lumi lumi
updated 13.6 years ago by ▴ 440 • written 13.6 years ago by ▴ 350
0
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0
replies
742
views
Bioconductor Digest, Vol 109, Issue 14
Annotation lumi Annotation lumi
13.6 years ago Pan Du ▴ 440
0
votes
0
replies
2.0k
views
reading with lumi
Preprocessing PROcess lumi methylumi Preprocessing PROcess lumi methylumi
13.6 years ago Tim Triche ★ 4.2k
0
votes
0
replies
1.2k
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reading with lumi
lumi lumi
13.6 years ago Ed Siefker ▴ 230
0
votes
10
replies
1.7k
views
warning in lumi
Proteomics lumi Proteomics lumi
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 110
0
votes
1
reply
2.6k
views
Estimating fold change from limma 'log2FC' using lumi
Microarray Normalization limma lumi Microarray Normalization limma lumi
updated 13.6 years ago by ▴ 30 • written 13.6 years ago by 53k
0
votes
0
replies
1.6k
views
Estimating fold change from limma 'log2FC' using lumi vst instead of log2 transformation?
Microarray qPCR Normalization limma lumi Microarray qPCR Normalization limma lumi
13.6 years ago Ross ▴ 30
0
votes
0
replies
1.5k
views
lumi and 450k control probe files
probe PROcess lumi probe PROcess lumi
13.8 years ago Oliver Hofmann ▴ 50
0
votes
0
replies
702
views
Median/Quantile values table
lumi lumi
13.8 years ago Guest User ★ 13k
0
votes
0
replies
1.3k
views
lumiR Does Not Create lumi Batch
Annotation lumi Annotation lumi
13.8 years ago Sean Davis 21k
243 results • Page 2 of 5
Recent ...
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Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups by Gordon Smyth 53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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