Showing : lumi • reset
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lumiR Does Not Create lumi Batch
lumi lumi
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 750
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2
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1.1k
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issue with limma?
limma lumi limma lumi
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 180
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1.2k
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diagnosing problems with processing microarray data using lumi package
Microarray probe PROcess convert lumi Microarray probe PROcess convert lumi
13.9 years ago Juliet Hannah ▴ 360
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4
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1.4k
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MA plots for large number of arrays
affy affyPLM beadarray lumi affy affyPLM beadarray lumi
updated 13.9 years ago by ▴ 740 • written 13.9 years ago by ▴ 360
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1.5k
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lumi: Methylation450 Data Input
lumi lumi
updated 13.9 years ago by ▴ 580 • written 13.9 years ago by ▴ 40
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2
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2.7k
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unable to install lumi package
lumi BiocInstaller lumi BiocInstaller
updated 13.9 years ago by 68k • written 13.9 years ago by ▴ 360
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775
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Sample Grouping
lumi lumi
14.0 years ago rajasereddy ▴ 10
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2
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945
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About GEO submission of Illumina data
lumi lumi
updated 14.1 years ago by 21k • written 14.1 years ago by ▴ 20
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845
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About GEO submission of Illumina data by lumi
lumi lumi
14.1 years ago Yu Leng Phua ▴ 20
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1.1k
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lumi, Illumina Methylation 450k, and robust methylation calls
lumi lumi
updated 14.2 years ago by ▴ 270 • written 14.2 years ago by ▴ 10
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1.2k
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adding annotation to illumina data
limma convert lumi limma convert lumi
14.2 years ago Kripa R ▴ 180
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2
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1.3k
views
inconsistent CHR mapping- IlluminaHumanMethylation450k.db
Annotation probe convert lumi Annotation probe convert lumi
updated 14.3 years ago by ▴ 30 • written 14.3 years ago by ▴ 10
0
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2
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1.4k
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memory problem
Normalization lumi methylumi Normalization lumi methylumi
updated 14.3 years ago by ▴ 620 • written 14.3 years ago by 21k
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5
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1.8k
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lumi, Illumina Methylation 450k, and robust methylation calls
lumi lumi
14.3 years ago Pan Du ▴ 440
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1
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1.3k
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lumi, Illumina Methylation 450k, and robust methylation calls
lumi lumi
updated 14.3 years ago by ▴ 620 • written 14.3 years ago by ▴ 270
0
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1
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751
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methylated and unmethylated function
lumi lumi
updated 14.3 years ago by ★ 4.2k • written 14.3 years ago by ▴ 30
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3
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1.3k
views
lumi and plotHousekeepingGene
Cancer lumi Cancer lumi
updated 14.3 years ago by ▴ 440 • written 14.3 years ago by ▴ 740
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9
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2.1k
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Lumi methylation analysis errors in lmFit
Normalization lumi Normalization lumi
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 100
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1.3k
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Chip version of Illumina HT 12 data [ lumi getChipInfo() method ]
Microarray Normalization Cancer Breast lumi Microarray Normalization Cancer Breast lumi
14.4 years ago Md.Mamunur Rashid ▴ 260
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1.2k
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lumi : Problems with the gammaFitEM() and lumiMethyStatus() functions.in lumi
Microarray Cancer lumi Microarray Cancer lumi
14.4 years ago NAIARA GARCÍA ▴ 10
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935
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lumi on 450K question
Genetics lumi Genetics lumi
14.4 years ago Pan Du ▴ 440
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2
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1.3k
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lumi: estimateMethylationBG problem
Annotation Normalization Cancer probe lumi Annotation Normalization Cancer probe lumi
updated 14.4 years ago by ▴ 620 • written 14.4 years ago by ▴ 440
0
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1
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861
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Methylation status using lumi
lumi lumi
updated 14.4 years ago by ★ 4.2k • written 14.4 years ago by ▴ 10
0
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0
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889
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gammaFitEM()
Microarray lumi Microarray lumi
14.4 years ago Richard C. McEachin ▴ 10
0
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2
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1.3k
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Reading methylation data using lumi package
lumi lumi
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 20
0
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5
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2.1k
views
problems installing lumi
lumi lumi
updated 14.5 years ago by ★ 8.2k • written 14.5 years ago by ▴ 620
0
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1
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2.0k
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Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
updated 14.5 years ago by ▴ 80 • written 14.5 years ago by ▴ 620
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1.3k
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Lumi problem of adding control data
probe lumi probe lumi
updated 14.6 years ago by ▴ 370 • written 14.6 years ago by ▴ 80
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787
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Fwd: Lumi problem of adding control data
probe lumi probe lumi
14.6 years ago Pan Du ▴ 80
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3
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1.4k
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Lumi problem
probe lumi probe lumi
14.6 years ago mali salmon ▴ 370
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2
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1.6k
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Lumi: LumiT vst transform error
lumi lumi
updated 14.6 years ago by ★ 1.2k • written 14.6 years ago by ▴ 30
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1.1k
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Question regarding background correction in lumi package
Microarray lumi Microarray lumi
14.6 years ago Pan Du ★ 1.2k
0
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3
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1.8k
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Adding Illumina GEO GPL IDs to IlluminaIDMapping?
SystemsBiology lumi SystemsBiology lumi
updated 14.7 years ago by 21k • written 14.7 years ago by ★ 1.2k
0
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1
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2.1k
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Possible issue with detection p-values in Lumi package
probe limma lumi probe limma lumi
updated 14.8 years ago by ★ 3.6k • written 14.8 years ago by ▴ 20
0
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990
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Merging bioconductor lumi annotations with lumi output
Annotation probe lumi Annotation probe lumi
14.8 years ago Thomas Hampton ▴ 750
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1.0k
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Merging bioconductor lumi annotations with lumi output
Annotation probe lumi Annotation probe lumi
14.8 years ago Pan Du ★ 1.2k
0
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3
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1.2k
views
New Lumi data fails to load via lumiR
Annotation lumi Annotation lumi
updated 14.8 years ago by ▴ 300 • written 14.8 years ago by ▴ 750
0
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1.2k
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Modeling of methylation status using lumi
Microarray lumi BRAIN Microarray lumi BRAIN
14.8 years ago Pan Du ★ 1.2k
0
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1.2k
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Results of QC of Demodata included in the package, HumMeth27QCReport
Normalization lumi methylumi Normalization lumi methylumi
14.9 years ago Francesco Mancuso ▴ 40
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1.1k
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Illumina data analysis using lumi
probe lumi probe lumi
14.9 years ago Pan Du ★ 1.2k
0
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3
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1.5k
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Processing of Illumina Infinium methylation microarray data using lumi - addColorChannelInfo bug?
lumi lumi
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 140
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1.0k
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Lumi: problems reading a GenomStudio file
GO lumi GO lumi
15.1 years ago Østensen, Ingrid Helen Garmann ▴ 10
0
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1.4k
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about lumi support for Illumina HT-12 v4
Annotation probe annotate lumi Annotation probe annotate lumi
15.3 years ago Pan Du ★ 1.2k
0
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6
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1.9k
views
Illumina data and GO2heatmap
Annotation lumi Annotation lumi
updated 15.3 years ago by ▴ 480 • written 15.3 years ago by ▴ 70
0
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2
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1.4k
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annotating lumi
Microarray Annotation Normalization probe annotate lumi Microarray Annotation probe lumi
updated 15.4 years ago by ▴ 80 • written 15.4 years ago by ▴ 90
0
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2
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1.8k
views
help with lumi
Microarray Annotation Normalization probe lumi Microarray Annotation Normalization probe
updated 15.4 years ago by ★ 1.2k • written 15.4 years ago by ▴ 90
0
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2
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1.5k
views
help with illumina microarray (DASL)
Microarray Annotation annaffy lumi Microarray Annotation annaffy lumi
updated 15.4 years ago by ★ 1.2k • written 15.4 years ago by ▴ 90
0
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2
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2.1k
views
lumi annotation using nuID, missing gene symbols
Annotation probe annotate lumi Annotation probe annotate lumi
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ▴ 170
0
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3
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1.4k
views
Memory and vector size management on linux 64bit
Microarray lumi Microarray lumi
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ▴ 200
0
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2
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1.0k
views
problem with lumiRatAll.db
Annotation Cancer probe annotate lumi Annotation Cancer probe annotate lumi
updated 15.7 years ago by ▴ 300 • written 15.7 years ago by ▴ 20
243 results • Page 3 of 5
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Answer: Gatins Set error by James W. MacDonald 68k
`GatingSet` isn't a function in `flowCore`. It is however in `flowWorkspace`, which you would need to load first.
Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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