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MeDIP seq data analysis
medip_seq
Macs
5.9 years ago
Mar Mar
▴ 20
0
votes
1
reply
1.4k
views
How to find sites with H3K27me3 loss?
Chip Seq
Histone
H3K27me3
macs
diffbind
6.4 years ago
researcher
• 0
2
votes
3
replies
11k
views
DiffBind for ATAC-seq
atac-seq
diffbind
macs2
macs
peak finding
updated 8.9 years ago by
BioinfGuru
▴ 70 • written 9.4 years ago by
igor
▴ 50
1
vote
2
replies
2.8k
views
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value
medips
MACS
updated 10.7 years ago by
Lukas Chavez
▴ 570 • written 10.7 years ago by
tptacek3050
• 0
4 results • Page
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Comment: DiffBind plot.profile error
by
a2sahaaaq2c
• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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