Bioconductor MakeTxDbFromBiomart

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biomart txdb makeTxDbFromBiomart GenomicFeatures

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by ksomi47 • 0

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1.7k

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R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl

updated 13 months ago by Shreyash ▴ 10 • written 5.4 years ago by rtwest • 0

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software error txdb maketxdbfrombiomart

5.6 years ago katie_emelianova • 0

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genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart rtracklayer

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by james.dalgleish ▴ 30

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1.6k

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crash SGSeq TxDb makeTxDbFromBiomart TxFeatures

updated 6.6 years ago by Leonard Goldstein ▴ 220 • written 6.7 years ago by oolongoni ▴ 10

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maketxdbfrombiomart

6.7 years ago floriandeckert ▴ 30

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1.8k

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biomart genomicfeatures maketxdbfrombiomart ensembldb ensDbFromGtf

updated 6.8 years ago by Johannes Rainer ★ 2.0k • written 6.8 years ago by Marie • 0

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1.9k

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biomart maketxdbfrombiomart genomicfeatures

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by kaur.alasoo ▴ 30

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3.1k

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genomicfeatures biomart maketxdbfrombiomart

updated 7.3 years ago by Thomas Maurel ▴ 800 • written 7.3 years ago by Didi ▴ 10

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biomart maketxdbfrombiomart genomicfeatures

7.8 years ago Ryan C. Thompson ★ 7.9k

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biomart maketxdbfrombiomart granges

updated 8.2 years ago by Vincent J. Carey, Jr. 6.7k • written 8.2 years ago by vinod.acear ▴ 50

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software error maketxdbfrombiomart

updated 8.5 years ago by Maciej Jończyk • 0 • written 8.5 years ago by luigi.cerulo ▴ 40

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2.7k

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makeTxDbFromBiomart genomicfeatures txdb biomart

updated 8.6 years ago by James W. MacDonald 65k • written 8.6 years ago by vinod.acear ▴ 50

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Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…

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Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…

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Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

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