Showing : crash • reset
3
votes
5
replies
700
views
R session crash with SGSeq::convertToTxFeatures
crash SGSeq TxDb makeTxDbFromBiomart TxFeatures
updated 3.8 years ago by ▴ 110 • written 3.8 years ago by ▴ 10
0
votes
7
replies
801
views
RankProd crashing - stability issues?
rankprod crash
4.1 years ago bhgyu ▴ 30
1
vote
6
replies
2.3k
views
Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
software error bug crash Gviz
updated 5.0 years ago by ★ 1.6k • written 5.1 years ago by ▴ 160
2
votes
5
replies
1.4k
views
EBImage crashing in for-loop
ebimage crash image analysis
updated 6.1 years ago by ▴ 750 • written 6.1 years ago by • 0
4 results • Page 1 of 1
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Comment: Best practice for quantifying sncRNA by Abhishek • 0
I did use the genome as decoy. And I used whole transcriptome from Gencode for indexing. Maybe I should index using just non coding transc…
Comment: Best practice for quantifying sncRNA by Abhishek • 0
Thank you for your suggestions. Throwing away larger reads sounds true, I'll try using Cutadapt for that besides adapter trimming. I did …
Comment: Best practice for quantifying sncRNA by Abhishek • 0
Thanks, I will try out Bowtie. Is GeneGlobe and Qiagen the same company ? https://www.qiagen.com/us/resources/download.aspx?id=bea2dcfa-…
Answer: Using both spike in and TMM normalizations in ChIP-seq samples by Gordon Smyth 43k
It is impossible to use both spike-in or TMM normalization. You must do one or the other. They replace each other, they cannot be combined.…
Comment: Best practice for quantifying sncRNA by ATpoint ▴ 700
If the sequences are 20-something bp long then it appears logical to me to throw away any reads that are longer than that after adapter tri…
Votes
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
Time Series Analysis
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels
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