Biostar Crash

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3

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5

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crash SGSeq TxDb makeTxDbFromBiomart TxFeatures

updated 5.4 years ago by Leonard Goldstein ▴ 150 • written 5.4 years ago by oolongoni ▴ 10

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rankprod crash

5.6 years ago bhgyu ▴ 30

1

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6

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software error bug crash Gviz

updated 6.5 years ago by florian.hahne@novartis.com ★ 1.6k • written 6.6 years ago by Philip Lijnzaad ▴ 160

2

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5

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ebimage crash image analysis

updated 7.6 years ago by Andrzej Oleś ▴ 750 • written 7.6 years ago by mk.applebee • 0

4 results • Page 1 of 1

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Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k

Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.

Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0

Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?

Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0

Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…

Comment: Combat and dds Object by shaimaa • 0

I used the combat-seq but the deseq complain as its not integer what should i do

Answer: Different summary() and results() values in DeSeq2 by Basti ▴ 540

summary() tells you the number of genes with low counts, see independant filtering of results in the DESeq2 vignette : https://www.biocondu…

Votes

Answer: mas5calls function doesn't work; mirna40cdf problem

Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem

Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data

A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings

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Popular Question to Guido Hooiveld ★ 3.5k

Scholar to James W. MacDonald 62k

Commentator to Michael Love 39k