Bioconductor Maketxdbfrombiomart

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12k

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software error maketxdbfrombiomart

updated 7.5 years ago by Maciej Jończyk • 0 • written 7.6 years ago by luigi.cerulo ▴ 40

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1.1k

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crash SGSeq TxDb makeTxDbFromBiomart TxFeatures

updated 5.7 years ago by Leonard Goldstein ▴ 150 • written 5.7 years ago by oolongoni ▴ 10

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genomicfeatures biomart maketxdbfrombiomart

updated 6.4 years ago by Thomas Maurel ▴ 790 • written 6.4 years ago by Didi ▴ 10

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646

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biomart txdb makeTxDbFromBiomart GenomicFeatures

updated 3.3 years ago by James W. MacDonald 63k • written 3.3 years ago by ksomi47 • 0

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genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart rtracklayer

updated 5.5 years ago by Michael Lawrence 11k • written 5.5 years ago by james.dalgleish ▴ 30

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biomart genomicfeatures maketxdbfrombiomart ensembldb ensDbFromGtf

updated 5.8 years ago by Johannes Rainer ★ 2.0k • written 5.8 years ago by Marie • 0

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1.8k

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biomart maketxdbfrombiomart granges

updated 7.2 years ago by Vincent J. Carey, Jr. 6.6k • written 7.2 years ago by vinod.acear ▴ 50

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844

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biomart maketxdbfrombiomart genomicfeatures

6.8 years ago Ryan C. Thompson 7.8k

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biomart maketxdbfrombiomart genomicfeatures

updated 6.3 years ago by James W. MacDonald 63k • written 6.3 years ago by kaur.alasoo ▴ 30

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makeTxDbFromBiomart genomicfeatures txdb biomart

updated 7.6 years ago by James W. MacDonald 63k • written 7.6 years ago by vinod.acear ▴ 50

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software error txdb maketxdbfrombiomart

4.6 years ago katie_emelianova • 0

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R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl

updated 5 weeks ago by Shreyash • 0 • written 4.5 years ago by rtwest • 0

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862

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maketxdbfrombiomart

5.7 years ago floriandeckert ▴ 30

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Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Gordon Smyth 47k

limma already adjusts for the baseline expression level of each subject. Trying to include baseline expression explicitly in the linear mod…

Comment: Remove duplicate genera in DEseq output? by ATpoint ★ 2.9k

This seems to be very specific rather than a general and technical DESeq2 question. See the last point of https://support.bioconductor.org/…

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Hi @mike-smith , you are correct. I was trying to select the ones that have some GO annotations by using the `with_go` filter. I was confus…

Answer: Can VST-transformed community composition data be expressed as relative abundanc by Michael Love 40k

The point of the VST is to make the data systematically homoskedastic (that is, not systematic trend of variance over mean, but not e.g. fo…

Comment: How to update a package at Bioconductor by ma79 • 0

thanks, just informed the original maintainer to send an email.

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A: Using R package 'limma' on pre-normalized counts and the effect of non-equivalen

Using R package 'limma' on pre-normalized counts and the effect of non-equivalent reads/sample on limma linear model

A: What can I do if I only have TPM but not raw counts data?

What can I do if I only have TPM but not raw counts data?

Differential expression of FPKM from RNA-seq data using limma and voom()

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Teacher to deeenes ▴ 30