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methy
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Epic v2 Annotation CpG_maf source?
MethylationArray
methy
EPICv2manifest
10 months ago
Meghan
• 0
1
vote
4
replies
3.8k
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Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData
methy
Bioconductor
minfi
4.7 years ago
shweta
• 0
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Comment: Could we detect difference at pathway level but not significant different at gen
by
Chi
• 0
The extrusion process affects kibble texture flavor and digestibility shaping both nutrition and taste. Balance is keyjust like in http://r…
Comment: Could we detect difference at pathway level but not significant different at gen
by
Chi
• 0
GSVA works when gene level changes are small but pathways shift as a group. After your analysis take a quick break with https://cookieclick…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…
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Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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