3.0 years ago
Gandino
•
0
0
votes
0
replies
874
views
0
votes
2
replies
884
views
updated 4.6 years ago by
Michael Love
42k
•
written 4.6 years ago by
anshulmbi
•
0
0
votes
0
replies
980
views
1
vote
1
reply
1.2k
views
updated 5.2 years ago by
Michael Love
42k
•
written 5.2 years ago by
anshulmbi
•
0
Recent ...
Replies
Comment: ANOVA like approach of edgeR
by
Yunshun Chen
▴
870
If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …
Comment: ANOVA like approach of edgeR
by
SamGG
▴
350
Simply remove the cell type from the model.
design <- model.matrix(~targets$Status)
Answer: ANOVA like approach of edgeR
by
Yunshun Chen
▴
870
You could try the followings:
> design <- model.matrix(~ 0 + group)
> contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…
Answer: Identical samples after deseq2 batch effect removal
by
maripane
•
0
Thanks Michael, so is there a way to work around this issue?
Can I somehow make sure I can remove this batch effects without overcorrecti…
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
•
0
The updated version worked well on my data. Thank you!
Votes
Awards
• All
Popular Question to
Anna
▴
20
Popular Question to
Talip
▴
10
Popular Question to
alexandre.blais
▴
50
Locations
• All
Germany, 2 minutes ago
Türkiye, 5 minutes ago
France, 9 minutes ago
United Kingdom, 25 minutes ago
United States, 30 minutes ago
Germany, 2 minutes ago
Türkiye, 5 minutes ago
France, 9 minutes ago
United Kingdom, 25 minutes ago
United States, 30 minutes ago
Traffic: 755 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6