Bioconductor Motifstack

Showing : motifstack • reset

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2.1k

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motifstack

updated 8.2 years ago by Ou, Jianhong ★ 1.3k • written 8.2 years ago by map2085 ▴ 40

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motifstack plotMotifLogoStack

4.7 years ago saadmurtazakhan ▴ 10

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motifStack R

2.1 years ago Marwah • 0

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850

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motifStack

updated 6.3 years ago by Ou, Jianhong ★ 1.3k • written 6.3 years ago by viyjy • 0

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motifstack meme

updated 6.1 years ago by Ou, Jianhong ★ 1.3k • written 6.1 years ago by lmolla ▴ 10

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motifStack

updated 5.1 years ago by Ou, Jianhong ★ 1.3k • written 5.1 years ago by Bioinformatics ▴ 30

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motifStack motifStack

10.4 years ago Ou, Jianhong ★ 1.3k

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motifStack motifStack

10.5 years ago Ou, Jianhong ★ 1.3k

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1.1k

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motifStack motifStack

10.5 years ago Ou, Jianhong ★ 1.3k

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683

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motifstack meme

6.1 years ago aramp10 • 0

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975

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motifstack GhostScript r

7.3 years ago utra96 • 0

11 results • Page 1 of 1

Recent ...

Replies

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0