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msaPrettyPrint()
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2
votes
2
replies
4.9k
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How to get msa output in fasta format
msa
msaprettyprint()
updated 7.7 years ago by
UBod
▴ 300 • written 7.7 years ago by
cav3gh
• 0
0
votes
1
reply
1.9k
views
Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
msaprettyprint()
latex
pdf
msa
updated 8.0 years ago by
UBod
▴ 300 • written 8.0 years ago by
Cecil
• 0
2
votes
11
replies
7.6k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint()
msa
multiplealignment
export
updated 8.0 years ago by
UBod
▴ 300 • written 8.0 years ago by
Assa Yeroslaviz
★ 1.5k
8
votes
14
replies
13k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 8.6 years ago by
tongtong.wang1210
• 0 • written 9.0 years ago by
Olorin
▴ 50
1
vote
2
replies
1.8k
views
msaPrettyPrint cannot handle long sequences?
msa
msaprettyprint()
multiple sequence alignment
8.9 years ago
map2085
▴ 40
1
vote
1
reply
5.7k
views
Using msa msaPrettyPrint(): issues with latex
msa
latex
msaPrettyPrint()
9.0 years ago
Olorin
▴ 50
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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
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Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
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The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
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Gordon Smyth
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I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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