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Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with by Gordon Smyth 52k

> Specific Question 1: Is there a preferred paradigm for voomLmFit for paired RNA-seq between blocking on individual and including individu…

Comment: Problem at champ.load by Josh • 0

See my anser--I was able to fix this error by installing a specific ChAMP version

Answer: Problem at champ.load by Josh • 0

It looks like the current Bioconducter version of ChAMP (2.36) does not support EPICv2. You have to install a github version of a previous …

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

@mikelove Dear Dr. Love, for this design, you recommend using the model "~condition + time + condition:subject.nested + condition:time" com…

Answer: myvariant error by Christelle • 0

An example of my data : [1] "chr1:g.877831T>C" [2] "chr1:g.878314G>C" …

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Comment: Identifying potentially associated gene set to drug response using GSVA

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

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