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Extract specific portion of a string and paste to a new column in R
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updated 3.4 years ago by 700 • written 3.5 years ago by • 0
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ERROR IN INSTALLATION PACKAGE IN R
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updated 3.2 years ago by 700 • written 3.2 years ago by • 0
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Genomics data
mygene offtopic
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
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Feedback needed on new user-friendly BED file tool
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Editing Plots Generated Using MicrobiomeAnalyst
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updated 4.5 years ago by 68k • written 4.5 years ago by • 0
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DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
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Why is RNA-Seq library size not constant among samples?
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Spam: Small Business Directory Emerald Coast
BUScorrect offtopic
updated 13 months ago by 4.3k • written 13 months ago by 0
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graper 1.22 Build is Broken
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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