Bioconductor Oligo package

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microarray mirna oligo package pdinfobuilder pd.mirna

updated 5.9 years ago by soumyab.g ▴ 10 • written 8.4 years ago by rolan.zauner ▴ 20

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oligo package

updated 6.5 years ago by James W. MacDonald 68k • written 6.5 years ago by cpyadav22 • 0

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oligo package

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by majeskea • 0

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1.5k

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amazon bioconductor aws s3 oligo package affybatch

7.5 years ago perdedorium • 0

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oligo package Rstudio fatal error microarray CEL

7.9 years ago biostR ▴ 10

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affy oligoclasses oligo package pdinfobuilder annotationdbi

updated 8.3 years ago by James W. MacDonald 68k • written 8.3 years ago by Aedin Culhane ▴ 510

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affy package boxplot hgu133plus2 oligo package

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by Javier Pérez Florido ▴ 840

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pseudoimage oligo affymetrix mouse gene arrays oligo package

updated 9.0 years ago by James W. MacDonald 68k • written 9.0 years ago by Javier Pérez Florido ▴ 840

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

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Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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