Bioconductor Oligo package

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microarray mirna oligo package pdinfobuilder pd.mirna

updated 5.8 years ago by soumyab.g ▴ 10 • written 8.2 years ago by rolan.zauner ▴ 20

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oligo package

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by cpyadav22 • 0

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oligo package

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by majeskea • 0

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amazon bioconductor aws s3 oligo package affybatch

7.4 years ago perdedorium • 0

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oligo package Rstudio fatal error microarray CEL

7.8 years ago biostR ▴ 10

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affy oligoclasses oligo package pdinfobuilder annotationdbi

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by Aedin Culhane ▴ 510

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affy package boxplot hgu133plus2 oligo package

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by Javier Pérez Florido ▴ 840

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pseudoimage oligo affymetrix mouse gene arrays oligo package

updated 8.8 years ago by James W. MacDonald 68k • written 8.8 years ago by Javier Pérez Florido ▴ 840

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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