Bioconductor Paired-end reads

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922

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diffbind paired-end reads

updated 2.9 years ago by Rory Stark ★ 5.0k • written 6.7 years ago by rbronste ▴ 60

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1.2k

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paired-end reads bam file

5.8 years ago ioannis.vardaxis ▴ 30

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1.0k

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dnaseq rtracklayer paired-end reads

6.2 years ago zwfanwz678 • 0

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1.0k

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summarizeoverlaps paired-end reads readGAlignmentPairs

6.5 years ago teresati ▴ 10

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779

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quasr quasr error paired-end reads rnaseq

6.7 years ago guillaume.dachy • 0

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903

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quasr paired-end reads rnaseq

6.7 years ago guillaume.dachy • 0

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828

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quasr rnaseq paired-end reads

6.7 years ago guillaume.dachy • 0

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1.3k

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rsamtools paired-end reads countbam

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by Dario Strbenac ★ 1.5k

8 results • Page 1 of 1

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Answer: ''Model_Matrix'' error by Gordon Smyth 48k

This is actually an error message from base R rather than from limma. The error says that `Group` contains only one value, so your assumpti…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…

Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

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Steps needed to change design (relevel factors) in DESeq2

Answer: DMRcate design

Comment: DMRcate design

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