Showing : pamr • reset
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
5.7 years ago jmsendoya • 0
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pamr
pamr pamr
updated 11.4 years ago by 65k • written 11.4 years ago by ▴ 10
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1.2k
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pam implementation
pamr pamr
updated 11.5 years ago by ▴ 280 • written 11.5 years ago by ★ 13k
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1.4k
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a bug in the function pamr.plotcen()
pamr pamr
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 90
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1.8k
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Error in pamr.predict
pamr pamr
updated 15.1 years ago by 16k • written 15.1 years ago by ▴ 10
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1.1k
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problem regarding runtime of pamr.cv
pamr pamr
updated 15.2 years ago by 65k • written 15.2 years ago by ▴ 170
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question about pamr.listgenes ....
pamr pamr
15.7 years ago ALok ▴ 170
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1.1k
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pamr.cv function
Cancer pamr Cancer pamr
16.2 years ago Patricia Greninger ▴ 10
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1.2k
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problem with pamr.listgenes in pamr package
pamr pamr
updated 17.0 years ago by ▴ 250 • written 17.0 years ago by ▴ 10
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1.4k
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Error of pamr.knnimpute
Microarray pamr Microarray pamr
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 10
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846
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magnifying genenames in pamr.plotcen()
pamr pamr
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 830
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941
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pamr package - problem with pamr.cv() function
pamr pamr
18.2 years ago Vincent Negre ▴ 30
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1.2k
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How to write a text file of a pamr.confusion table ?
pamr pamr
updated 18.4 years ago by ▴ 250 • written 18.4 years ago by ▴ 540
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1.0k
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pamr and samr problems with windowsXP - pop-up windows
pamr pamr
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 540
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1.1k
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pamr, samr and RWinEdt conficts - New editor req info
pamr pamr
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 540
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Re: Re: segmentation error in pamr.knnimpute
pamr impute pamr impute
19.0 years ago Alice Le Bars ▴ 40
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826
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segmentation error in pamr.knnimpute
pamr pamr
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 40
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1.5k
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pamr / R graphics recording
pamr pamr
updated 19.3 years ago by ▴ 40 • written 19.3 years ago by ▴ 130
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2
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1.7k
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Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 19.5 years ago by ▴ 680 • written 19.5 years ago by ▴ 10
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1.0k
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Application of PAMR from Affy to spot data
affy pamr affy pamr
updated 19.6 years ago by ★ 5.5k • written 19.6 years ago by ▴ 180
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6
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1.5k
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pamr Error: each class must have >1 sample
GO pamr GO pamr
updated 19.8 years ago by ▴ 630 • written 19.8 years ago by ★ 1.4k
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754
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pamr and sample.subset option
pamr pamr
19.8 years ago Dr Gyorffy Balazs ▴ 320
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1.2k
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Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 20.0 years ago by ★ 1.0k • written 20.0 years ago by ▴ 180
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Problem with PAM using R 1.9.0
pamr pamr
20.0 years ago Michelle Kittleson ▴ 10
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1
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1.4k
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Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 20.0 years ago by ★ 13k • written 20.0 years ago by ▴ 810
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1.2k
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Bug with R 1.9.0 beta (3/23) and PAMR?
pamr pamr
updated 20.1 years ago by ▴ 360 • written 20.1 years ago by ▴ 180
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wee query on pamr.knnimpute
pamr pamr
20.2 years ago Aedin Culhane ▴ 310
27 results • Page 1 of 1
Recent ...
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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