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pamr
•
reset
0
votes
0
replies
1.1k
views
ComBat covariate bias when building centroid based predictors
combat
combat sva
pamr
limma design matrix
sva
6.4 years ago
jmsendoya
• 0
0
votes
1
reply
1.2k
views
pamr
pamr
pamr
updated 12.2 years ago by
James W. MacDonald
68k • written 12.2 years ago by
mbranham@fcm.uncu.edu.ar
▴ 10
0
votes
2
replies
1.4k
views
pam implementation
pamr
pamr
updated 12.3 years ago by
John Lande
▴ 280 • written 12.3 years ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
1.6k
views
a bug in the function pamr.plotcen()
pamr
pamr
updated 13.7 years ago by
Martin Morgan
25k • written 13.7 years ago by
Alogmail2@aol.com
▴ 90
0
votes
1
reply
2.0k
views
Error in pamr.predict
pamr
pamr
updated 15.8 years ago by
Hervé Pagès
16k • written 15.9 years ago by
Richard Yanicky
▴ 10
0
votes
4
replies
1.4k
views
problem regarding runtime of pamr.cv
pamr
pamr
updated 16.0 years ago by
James W. MacDonald
68k • written 16.0 years ago by
ALok
▴ 170
0
votes
0
replies
1.1k
views
question about pamr.listgenes ....
pamr
pamr
16.5 years ago
ALok
▴ 170
0
votes
0
replies
1.3k
views
pamr.cv function
Cancer
pamr
Cancer
pamr
17.0 years ago
Patricia Greninger
▴ 10
0
votes
1
reply
1.4k
views
problem with pamr.listgenes in pamr package
pamr
pamr
updated 17.8 years ago by
Giovanni Coppola
▴ 250 • written 17.8 years ago by
Alice LE BARS
▴ 10
0
votes
1
reply
1.6k
views
Error of pamr.knnimpute
Microarray
pamr
Microarray
pamr
updated 18.1 years ago by
James W. MacDonald
68k • written 18.1 years ago by
washiot+1@gmail.com
▴ 10
0
votes
1
reply
971
views
magnifying genenames in pamr.plotcen()
pamr
pamr
updated 18.9 years ago by
James W. MacDonald
68k • written 18.9 years ago by
Benjamin Otto
▴ 830
0
votes
0
replies
1.1k
views
pamr package - problem with pamr.cv() function
pamr
pamr
18.9 years ago
Vincent Negre
▴ 30
0
votes
3
replies
1.4k
views
How to write a text file of a pamr.confusion table ?
pamr
pamr
updated 19.2 years ago by
Björn Usadel
▴ 250 • written 19.2 years ago by
Giulio Di Giovanni
▴ 540
0
votes
1
reply
1.2k
views
pamr and samr problems with windowsXP - pop-up windows
pamr
pamr
updated 19.4 years ago by
Seth Falcon
★ 7.4k • written 19.4 years ago by
Giulio Di Giovanni
▴ 540
0
votes
3
replies
1.3k
views
pamr, samr and RWinEdt conficts - New editor req info
pamr
pamr
updated 19.4 years ago by
Seth Falcon
★ 7.4k • written 19.4 years ago by
Giulio Di Giovanni
▴ 540
0
votes
0
replies
1.1k
views
Re: Re: segmentation error in pamr.knnimpute
pamr
impute
pamr
impute
19.8 years ago
Alice Le Bars
▴ 40
0
votes
1
reply
928
views
segmentation error in pamr.knnimpute
pamr
pamr
updated 19.8 years ago by
Seth Falcon
★ 7.4k • written 19.8 years ago by
Alice Le Bars
▴ 40
0
votes
2
replies
1.7k
views
pamr / R graphics recording
pamr
pamr
updated 20.1 years ago by
Min-Han Tan
▴ 40 • written 20.1 years ago by
Katleen De Preter
▴ 130
0
votes
2
replies
1.9k
views
Installation Problem on OS X
GO
geneplotter
graph
Rgraphviz
pamr
globaltest
GO
geneplotter
graph
Rgraphviz
pamr
updated 20.2 years ago by
Marcus Davy
▴ 680 • written 20.2 years ago by
David Rocke
▴ 10
0
votes
1
reply
1.2k
views
Application of PAMR from Affy to spot data
affy
pamr
affy
pamr
updated 20.4 years ago by
rgentleman
★ 5.5k • written 20.4 years ago by
Tan, MinHan
▴ 180
0
votes
6
replies
1.8k
views
pamr Error: each class must have >1 sample
GO
pamr
GO
pamr
updated 20.6 years ago by
Kasper Daniel Hansen
▴ 630 • written 20.6 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
858
views
pamr and sample.subset option
pamr
pamr
20.6 years ago
Dr Gyorffy Balazs
▴ 320
0
votes
2
replies
1.4k
views
Hierarchical clustering and shrinking centroids...
Classification
Clustering
pamr
Classification
Clustering
pamr
updated 20.7 years ago by
Stephen Henderson
★ 1.0k • written 20.7 years ago by
Tan, MinHan
▴ 180
0
votes
0
replies
1.3k
views
Problem with PAM using R 1.9.0
pamr
pamr
20.7 years ago
Michelle Kittleson
▴ 10
0
votes
1
reply
1.6k
views
Bioconductor 1.4 released
Proteomics
Annotation
Normalization
GO
Cancer
CGH
pamr
gcrma
gpls
affyPLM
webbioc
bim
updated 20.8 years ago by
Wolfgang Huber
★ 13k • written 20.8 years ago by
A.J. Rossini
▴ 810
0
votes
1
reply
1.4k
views
Bug with R 1.9.0 beta (3/23) and PAMR?
pamr
pamr
updated 20.9 years ago by
Liaw, Andy
▴ 360 • written 20.9 years ago by
Tan, MinHan
▴ 180
0
votes
0
replies
986
views
wee query on pamr.knnimpute
pamr
pamr
21.0 years ago
Aedin Culhane
▴ 310
27 results • Page
1 of 1
Recent ...
Replies
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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