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plink
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1.2k
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suggested r package
plink
9.4 years ago
rsalz2020
• 0
0
votes
2
replies
2.1k
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Error reading vcf converted from bed file
readvcf
plink
file conversion
bed
bioc-devel
9.1 years ago
mjsduncan
• 0
0
votes
0
replies
975
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Genetic Association analysis using four siblings among which three were affected and one was normal
genetics
plink
linkage disequilibrium
7.8 years ago
li lilingdu
▴ 450
0
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2
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1.1k
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permutation with plink
illumina
plink
permutation
updated 7.9 years ago by
James W. MacDonald
65k • written 7.9 years ago by
sedrinne
• 0
0
votes
1
reply
930
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replicating PLINK --genome pairwise IBD calculations.
PLINK
IBD
7.6 years ago
federico.calboli
• 0
5 results • Page
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Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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