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permutation
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Study Modules significance (or Modules Preservation) in ONE network
modulePreservation
WGCNA
modules significance
permutation
6.0 years ago • updated 4.1 years ago
harelarik
▴ 60
0
votes
0
replies
481
views
permutation and randomization tests
permutation
randomization
4.2 years ago
Bogdan
▴ 670
0
votes
1
reply
1.1k
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Error creating pool for permutation test (PeakPermTest)
permutation
pool
chippeakanno
5.8 years ago
ge2sasag
• 0
0
votes
2
replies
1.1k
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permutation with plink
illumina
plink
permutation
updated 7.9 years ago by
James W. MacDonald
65k • written 7.9 years ago by
sedrinne
• 0
9
votes
5
replies
5.0k
views
Differential expression analysis: Permutation Test
deseq2
limma
edger
permutation
updated 4 months ago by
Gordon Smyth
50k • written 8.2 years ago by
Radek
▴ 90
5 results • Page
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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