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plotCounts
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PlotCounts DESeq2 - how to plot count s for specific samples?
DESeq2
PlotCounts
14 months ago
annamariabugaj
▴ 10
1
vote
4
replies
1.6k
views
plotCounts to visualize variations of a specific genes along conditions
DESeq2
plotCounts
vst
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Laia
▴ 10
0
votes
2
replies
1.5k
views
How to plot gene counts using plotCounts() with just an individual contrast?
DESeq2
plotCounts
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
elizabethe819
• 0
0
votes
1
reply
962
views
Deseq2 how to get input data for plotCounts for a single gene
deseq2
plotcounts
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
sunthomas
• 0
0
votes
1
reply
1.3k
views
plot statistic values in a DEseq2 plotCounts plot
deseq2
plotCounts
pvalues
RNAseq
updated 4.3 years ago by
Michael Love
41k • written 4.3 years ago by
anne.hoffrichter
• 0
0
votes
3
replies
2.0k
views
Change order of conditions when plotting: plotCounts {DESeq2}
R
deseq2
plotcounts
5.0 years ago
ecg1g15
▴ 20
0
votes
5
replies
1.3k
views
Error DESeq2 plotCounts invalid class DESeqDataSet object undefined class for slot rowRanges GenomicRangesORGRangesList
deseq2
plotCounts
rowRanges
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
I.Castanho
▴ 50
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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