Bioconductor Plottracks

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1.5k

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Gviz plotTracks

updated 5.7 years ago by Robert Ivanek ▴ 750 • written 5.7 years ago by syliang • 0

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1.9k

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gviz plottracks generegiontrack

6.9 years ago gpwhiz ▴ 10

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gviz gviz-package datatrack plottracks

7.7 years ago stephen.williams ▴ 10

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3.6k

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Gviz-package biomart plottracks ucsctrack stickleback

updated 8.6 years ago by florian.hahne@novartis.com ★ 1.6k • written 8.7 years ago by br • 0

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1.4k

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gviz plottracks ideogramtrack

8.7 years ago cristianrohr768 • 0

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1.8k

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gviz plottracks alignmentstrack

updated 8.7 years ago by hesham.gibriel • 0 • written 8.7 years ago by TimothéeFlutre ▴ 80

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1.7k

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gviz granges plottracks

8.8 years ago Adam • 0

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1.3k

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Gviz plotTracks

8.8 years ago rubi ▴ 110

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1.6k

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Gviz plotTracks stacking

updated 9.2 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.2 years ago by shuoguo ▴ 10

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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