Showing : prada • reset
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analysis of FACS data using BioC
facs prada flowstats
5.2 years ago Bogdan ▴ 670
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cellHTS2 PlateList order problem
MultiChannel prada MultiChannel prada
12.5 years ago florian.hahne@novartis.com ★ 1.6k
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installation problem with Windows binary cellHTS_1.6.0.zip
prada prada
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 70
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rflowcyt and prada questions
prada rflowcyt prada rflowcyt
19.5 years ago Nolwenn LeMeur ▴ 140
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Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival Infrastructure Cancer hexbin prada rfcdmin rflowcyt Survival Infrastructure
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 80
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rflowcyt and prada questions
prada rflowcyt prada rflowcyt
updated 19.6 years ago by ▴ 140 • written 19.6 years ago by ▴ 10
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New version of prada available in 1.7 release
prada prada
20.1 years ago Seth Falcon ★ 7.4k
7 results • Page 1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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