Showing : preprocessing • reset
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network analyses on genes or probesets
Microarray Annotation Normalization Preprocessing Network Microarray Annotation Network
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 380
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Introductory BioC Course 27-29 April 09: Analyzing Microarray Experiments
Microarray Annotation Preprocessing Microarray Annotation Preprocessing
16.8 years ago Patrick Aboyoun ★ 1.6k
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xps rma() with HuGene-1_0-st-v1 on 64-bit architecture
Annotation Preprocessing probe oligo xps Annotation Preprocessing probe oligo xps
updated 16.8 years ago by ★ 3.9k • written 16.8 years ago by ▴ 270
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Limma and post statistical filtering of genes
Preprocessing limma Preprocessing limma
16.9 years ago Gordon Smyth 53k
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Limma and post statistical filtering of genes
Preprocessing limma Preprocessing limma
16.9 years ago Sally ▴ 250
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1.6k
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Multiple test question in micrarray- FDR
GO Preprocessing GO Preprocessing
updated 17.0 years ago by ▴ 220 • written 17.0 years ago by ★ 6.0k
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Normalization of Agilent miRNA arrays using spike-ins
miRNA Normalization Preprocessing vsn limma miRNA Normalization Preprocessing vsn limma
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 60
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Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 17.2 years ago by ★ 7.2k • written 17.2 years ago by ▴ 300
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limma: Combining probe level data prior to fitting
Microarray Preprocessing Regression Yeast probe affy limma Microarray Preprocessing Yeast
17.2 years ago Alex Gutteridge ▴ 650
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problem with makePDpackage, geometry issue
Preprocessing probe Preprocessing probe
17.3 years ago Brian Herb ▴ 80
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2
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1.8k
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ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 17.4 years ago by ★ 1.2k • written 17.4 years ago by ▴ 40
4
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how to test for genes of interest?
Normalization Preprocessing limma Normalization Preprocessing limma
17.4 years ago Gordon Smyth 53k
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1.1k
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preprocessing for tiling arrays (preprocessCore package)
Preprocessing Preprocessing
updated 17.4 years ago by ★ 1.2k • written 17.4 years ago by ▴ 340
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views
kOverA(k, A=100, na.rm=TRUE)
GO Preprocessing Cancer genefilter limma GO Preprocessing Cancer genefilter limma
updated 17.5 years ago by ★ 5.5k • written 17.5 years ago by ▴ 30
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views
Agilent single color array
Normalization Preprocessing vsn limma Normalization Preprocessing vsn limma
updated 17.5 years ago by ★ 6.5k • written 17.5 years ago by ▴ 400
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2
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Agilent single color array
Normalization Preprocessing vsn limma Normalization Preprocessing vsn limma
updated 17.5 years ago by 21k • written 17.5 years ago by ★ 6.5k
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1.2k
views
kOverA(k, A=100, na.rm=TRUE)
GO Preprocessing genefilter limma GO Preprocessing genefilter limma
updated 17.5 years ago by ★ 5.5k • written 17.5 years ago by ▴ 30
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Error in rma When Using Temp File from xps Package
Preprocessing PROcess xps Preprocessing PROcess xps
17.6 years ago cstrato ★ 3.9k
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1
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BioC 2.2 now available
SNP Microarray Genetics Annotation Preprocessing Bayesian Clustering Infrastructure Cancer
updated 17.6 years ago by ★ 1.6k • written 17.6 years ago by 25k
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3
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Webbioc error exprSet vs expressionSet
Preprocessing multtest webbioc Preprocessing multtest webbioc
17.7 years ago Balasubramanian Ganesan ▴ 70
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2.1k
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Median-Interquartile Normalization
Microarray SystemsBiology Annotation GO Preprocessing Clustering Cancer Yeast Organism GO
18.1 years ago McGee, Monnie ▴ 300
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0
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1.9k
views
Limma: Very high logFC values
Preprocessing probe vsn limma Preprocessing probe vsn limma
18.3 years ago Gordon Smyth 53k
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1
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1.6k
views
Problems with expresso
Preprocessing cdf affy affyio Preprocessing cdf affy affyio
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 380
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0
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918
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[OT] compatible preprocessing for Affy and non-Affy
Normalization Preprocessing affy Normalization Preprocessing affy
18.6 years ago Adaikalavan Ramasamy ★ 1.8k
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1.6k
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read.maimages problem under sun ?
Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy
18.6 years ago Amin Moghaddasi ▴ 130
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1.4k
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LAST ANNOUNCEMENT: CSAMA'07 [COURSE]
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
18.6 years ago stefano iacus ▴ 430
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affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.8 years ago Dick Beyer ★ 1.4k
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Normalization Preprocessing probe affy Normalization Preprocessing probe affy
18.9 years ago Ben Bolstad ★ 1.2k
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992
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray Normalization Preprocessing Cancer hgu133plus2 probe affy limma PROcess Cancer
18.9 years ago Henrik Bengtsson ★ 2.4k
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[COURSE ANNOUNCEMENT] CSAMA'07
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
18.9 years ago stefano iacus ▴ 430
0
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0
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845
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tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Preprocessing
19.1 years ago Mohammad Esad-Djou ▴ 520
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0
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862
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tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Cancer Preprocessing Cancer
19.1 years ago Alvord, Greg DMS [Contr] ▴ 160
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tasks of Background Correction and PM Corr =?iso-8859-15?q?ection_in_Prepro
Microarray Preprocessing probe Microarray Preprocessing probe
19.1 years ago Johannes Freudenberg ▴ 30
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2
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summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Microarray Normalization Preprocessing Cancer probe affy convert affyio Microarray Cancer
19.3 years ago James W. MacDonald 68k
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How to create a MAList or ExprSet object from a matrix
Normalization Preprocessing probe Category Normalization Preprocessing probe Category
19.4 years ago Jenny Drnevich ★ 2.2k
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last call for Boston bioc Training, 13-15 july, content revised
Annotation GO Preprocessing Clustering Yeast probe RSNPper biomaRt Annotation GO Yeast
19.5 years ago Vincent J. Carey, Jr. 6.7k
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[COURSE] CSAMA'06, few places available
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
19.6 years ago stefano iacus ▴ 430
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3
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3.1k
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Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
19.9 years ago McGee, Monnie ▴ 300
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0
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973
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ANN: Introductory R and Bioconductor Mini Course , Seattle, April 12-14
Microarray Annotation Preprocessing Cancer Microarray Annotation Preprocessing Cancer
19.9 years ago Nianhua Li ▴ 870
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3
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1.4k
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ad hoc tools for affy tiling arrays?
Normalization Preprocessing gcrma Normalization Preprocessing gcrma
updated 19.9 years ago by ▴ 310 • written 19.9 years ago by ★ 6.5k
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COURSE: Computational and Statistical Aspects of Microarray Analysis (IV)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
19.9 years ago stefano iacus ▴ 430
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1
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1.4k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 19.9 years ago by ★ 2.0k • written 19.9 years ago by ▴ 20
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compare expression measures (and AffyComp)
Preprocessing affycomp Preprocessing affycomp
updated 20.0 years ago by 21k • written 20.0 years ago by ▴ 520
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0
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1.3k
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Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
20.0 years ago Wolfgang Huber ★ 13k
0
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0
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735
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preprocessing separately from each other
Preprocessing Preprocessing
20.2 years ago Mohammad Esad-Djou ▴ 520
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3
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1.6k
views
LIMMA No residual using rmaPLM
Preprocessing affyPLM Preprocessing affyPLM
updated 20.3 years ago by 53k • written 20.3 years ago by ▴ 270
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0
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1.0k
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Wrapper of X-tandem into BioC for Proteomics
Preprocessing Preprocessing
20.3 years ago Simon Lin ▴ 210
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0
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1.1k
views
LPE method based on RMA vs. MAS5
Preprocessing LPE Preprocessing LPE
20.3 years ago Jain, Nitin ▴ 70
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2
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1.3k
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Preprocessing affymetrix data
Preprocessing Preprocessing
updated 20.4 years ago by ▴ 20 • written 20.4 years ago by ▴ 150
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0
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941
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last call, registrations for Boston Bioconductor Training, 21-23 July 2005
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
20.5 years ago Vincent J. Carey, Jr. 6.7k
175 results • Page 3 of 4
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Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0
Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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