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probe
•
reset
0
votes
0
replies
1.2k
views
diagnosing problems with processing microarray data using lumi package
Microarray
probe
PROcess
convert
lumi
Microarray
probe
PROcess
convert
lumi
14.0 years ago
Juliet Hannah
▴ 360
0
votes
11
replies
3.6k
views
GSVA: using Entrez ID's as identifiers
probe
GSVA
probe
GSVA
updated 14.0 years ago by
Robert Castelo
★ 3.4k • written 14.0 years ago by
Wendy Qiao
▴ 360
0
votes
0
replies
979
views
[limma] Unreliable spots - omitting in avereps
probe
limma
probe
limma
14.0 years ago
boczniak767
▴ 740
0
votes
1
reply
1.1k
views
problem with frma on U133AAofAv2 platform
probe
frma
probe
frma
updated 14.0 years ago by
Matthew McCall
▴ 830 • written 14.0 years ago by
Wang,Ying
▴ 20
0
votes
0
replies
740
views
illuminaHumanv4 mappings
probe
probe
14.0 years ago
Valerie Deffontaine
▴ 10
0
votes
4
replies
1.0k
views
Identifying the genome sequence of an affy probe
probe
affy
probe
affy
updated 14.0 years ago by
James W. MacDonald
68k • written 14.0 years ago by
Schragi Schwartz
▴ 20
0
votes
3
replies
1.3k
views
Probe Coordinates for the Affymetrix U133 2.0 plus array in the UCSC genome browser
probe
probe
updated 14.0 years ago by
James W. MacDonald
68k • written 14.0 years ago by
jason0701
▴ 190
0
votes
2
replies
2.6k
views
Installing packages on R v2.13.2, OSX multiple warning messages
Annotation
cdf
probe
affy
gcrma
Annotation
cdf
probe
affy
gcrma
updated 14.1 years ago by
James W. MacDonald
68k • written 14.1 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
limma suitability for correlated data
Microarray
Prostate
probe
limma
Microarray
Prostate
probe
limma
14.1 years ago
Max Mariasegaram
▴ 20
0
votes
0
replies
1.7k
views
illuminaHumanv4 mappings
Infrastructure
Cancer
Homo sapiens
probe
AnnotationDbi
ASSIGN
Infrastructure
Cancer
probe
14.1 years ago
Mark Cowley
▴ 910
1
vote
1
reply
1.9k
views
gcrma failed on mouse Gene 1.0 ST array
probe
gcrma
probe
gcrma
updated 14.1 years ago by
Guido Hooiveld
★ 4.1k • written 14.1 years ago by
Yupu Liang
▴ 50
0
votes
3
replies
2.6k
views
collapseRows function
probe
probe
updated 14.1 years ago by
Alex Gutteridge
▴ 650 • written 14.1 years ago by
Alyaa Mahmoud
▴ 10
0
votes
0
replies
866
views
Lumi problem
probe
probe
14.1 years ago
de With, Jytte
▴ 10
0
votes
1
reply
1.2k
views
how to get probe ids??
Microarray
probe
affy
Microarray
probe
affy
updated 14.1 years ago by
James W. MacDonald
68k • written 14.2 years ago by
anand m t
▴ 40
0
votes
0
replies
1.0k
views
problem with lumiR.batch log2 transformation
probe
probe
14.2 years ago
Briggs, Chris
▴ 20
0
votes
0
replies
1.8k
views
I: R: R: R: Probe-level analysis of exon arrays using xps
Annotation
Normalization
Preprocessing
Breast
Prostate
probe
GLAD
Category
xps
Annotation
14.2 years ago
Lavorgna Giovanni
▴ 80
0
votes
4
replies
2.0k
views
R: R: Probe-level analysis of exon arrays using xps
Annotation
Normalization
Breast
Prostate
probe
Category
xps
Annotation
Normalization
xps
updated 14.2 years ago by
cstrato
★ 3.9k • written 14.2 years ago by
Lavorgna Giovanni
▴ 80
0
votes
4
replies
1.4k
views
Probe-level analysis of exon arrays using xps
probe
xps
probe
xps
updated 14.2 years ago by
cstrato
★ 3.9k • written 14.2 years ago by
Lavorgna Giovanni
▴ 80
0
votes
2
replies
1.2k
views
what is the correct way of normalizing 3 different U133 platforms using RMA?
probe
probe
updated 14.2 years ago by
James W. MacDonald
68k • written 14.2 years ago by
Jack Luo
▴ 450
0
votes
1
reply
906
views
question regarding RMA on 2 different U133 platforms
probe
probe
updated 14.2 years ago by
James W. MacDonald
68k • written 14.2 years ago by
James Anderson
▴ 820
0
votes
7
replies
1.7k
views
matchPDict with mismatches allowed appears to drop names
probe
probe
updated 14.3 years ago by
Hervé Pagès
16k • written 14.3 years ago by
Ian Henry
▴ 50
0
votes
2
replies
1.3k
views
Fwd: Probe matching using vmatchPDict
Cancer
probe
Cancer
probe
updated 14.3 years ago by
Ian Henry
▴ 50 • written 14.3 years ago by
Hervé Pagès
16k
0
votes
1
reply
799
views
clustering of probe id
probe
probe
updated 14.3 years ago by
James W. MacDonald
68k • written 14.3 years ago by
sanchita 0804
▴ 50
0
votes
0
replies
1.1k
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe
microRNA
AgiMicroRna
probe
microRNA
AgiMicroRna
14.3 years ago
Viki S
▴ 20
0
votes
1
reply
1.3k
views
Probe matching using vmatchPDict
probe
probe
updated 14.3 years ago by
Hervé Pagès
16k • written 14.3 years ago by
Ian Henry
▴ 50
0
votes
2
replies
1.6k
views
Probe ID to Sequence
probe
probe
14.3 years ago
khadeeja ismail
▴ 400
0
votes
1
reply
1.2k
views
time series, normalize on time 0
probe
limma
probe
limma
14.3 years ago
Andrea Grilli
▴ 240
0
votes
0
replies
773
views
RMA Probe summarization for identical probe sequences
probe
probe
14.3 years ago
Gaj Stan BIGCAT
▴ 20
0
votes
1
reply
1.1k
views
Affymetrix: RMA probe summarization for identical probe sequences
Normalization
probe
Normalization
probe
updated 14.3 years ago by
Kasper Daniel Hansen
★ 6.5k • written 14.3 years ago by
Gaj Stan BIGCAT
▴ 20
0
votes
2
replies
1.8k
views
read.ilmn function query
probe
limma
a4
probe
limma
a4
updated 14.3 years ago by
Gordon Smyth
53k • written 14.3 years ago by
Natasha
▴ 440
0
votes
6
replies
3.0k
views
Library installation: odd error
cdf
probe
cdf
probe
updated 14.3 years ago by
Steve Lianoglou
★ 13k • written 14.3 years ago by
Michael Bauer
▴ 50
0
votes
0
replies
1.0k
views
Fwd: Unable to install packages
Microarray
Annotation
cdf
probe
cycle
Microarray
Annotation
cdf
probe
cycle
14.3 years ago
James W. MacDonald
68k
0
votes
0
replies
1.1k
views
Timecourse experiment: wrong experimental design?
TimeCourse
probe
limma
timecourse
TimeCourse
probe
limma
timecourse
14.3 years ago
Andrea Grilli
▴ 240
0
votes
2
replies
1.3k
views
inconsistent CHR mapping- IlluminaHumanMethylation450k.db
Annotation
probe
convert
lumi
Annotation
probe
convert
lumi
updated 14.3 years ago by
sohkhan@notes.cc.sunysb.edu
▴ 30 • written 14.3 years ago by
David Martino
▴ 10
0
votes
1
reply
1.1k
views
altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf
probe
affy
altcdfenvs
cdf
probe
affy
altcdfenvs
updated 14.4 years ago by
James W. MacDonald
68k • written 14.4 years ago by
Ariel Grostern
▴ 80
0
votes
0
replies
1.1k
views
Resend: altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf
probe
affy
altcdfenvs
cdf
probe
affy
altcdfenvs
14.4 years ago
Ariel Grostern
▴ 80
0
votes
2
replies
1.3k
views
AnnotationDbi:makeProbePackage for PM-only chips....getting closer.....now error in installation of probe package
cdf
probe
affy
AnnotationDbi
cdf
probe
affy
AnnotationDbi
updated 14.4 years ago by
James W. MacDonald
68k • written 14.4 years ago by
Ariel Grostern
▴ 80
0
votes
0
replies
1.3k
views
Converting makeProbePackage in AnnotationDbi to permit PM-only arrays
cdf
probe
affy
altcdfenvs
cdf
probe
affy
altcdfenvs
14.4 years ago
Ariel Grostern
▴ 80
0
votes
6
replies
2.0k
views
LIMMAing normalized and background corrected MA-data derived by a text file
Microarray
Normalization
probe
Microarray
Normalization
probe
updated 14.4 years ago by
Yong Li
▴ 190 • written 14.4 years ago by
"Gläßer, Christine"
▴ 50
0
votes
3
replies
1.4k
views
help with ACME package
probe
probe
14.4 years ago
Sean Davis
21k
0
votes
2
replies
1.7k
views
DNA copy ploting function
probe
DNAcopy
probe
DNAcopy
14.4 years ago
nac
▴ 280
0
votes
2
replies
884
views
Creating a figure showing Affy probe-set alignments along a small segment of chromosome
probe
graph
probe
graph
updated 14.5 years ago by
Sean Davis
21k • written 14.5 years ago by
Richard Student
▴ 30
0
votes
1
reply
702
views
Creating a graph showing Affy probe-set alignments along a small segment of chromosome
probe
graph
probe
graph
updated 14.5 years ago by
Steve Lianoglou
★ 13k • written 14.5 years ago by
Richard Student
▴ 30
0
votes
1
reply
876
views
Eliminating Absent Data
probe
affy
probe
affy
updated 14.5 years ago by
James W. MacDonald
68k • written 14.5 years ago by
Supriya Munshaw
▴ 40
0
votes
2
replies
1.3k
views
lumi: estimateMethylationBG problem
Annotation
Normalization
Cancer
probe
lumi
Annotation
Normalization
Cancer
probe
lumi
updated 14.5 years ago by
Ina Hoeschele
▴ 620 • written 14.5 years ago by
Pan Du
▴ 440
0
votes
0
replies
1.7k
views
Go terms attributes not available on Biomart, ensembl
miRNA
GO
probe
limma
matchprobes
biomaRt
arrayQualityMetrics
microRNA
miRNA
GO
probe
14.5 years ago
chawla
▴ 190
0
votes
4
replies
1.5k
views
Empty featureData in ExpressionSet generated by affy::justRMA
Annotation
hgu133a2
probe
affy
Annotation
hgu133a2
probe
affy
updated 14.5 years ago by
James W. MacDonald
68k • written 14.5 years ago by
David Shih
▴ 30
0
votes
5
replies
4.4k
views
extract intensity values from AffyBatch
probe
probe
updated 14.5 years ago by
James W. MacDonald
68k • written 14.5 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.2k
views
Go terms attributes not available on Biomart ensembl
GO
probe
biomaRt
GO
probe
biomaRt
updated 14.5 years ago by
Wolfgang Huber
★ 13k • written 14.5 years ago by
chawla
▴ 190
0
votes
0
replies
1.4k
views
empty go terms with bioMart
GO
Yeast
probe
PROcess
biomaRt
GO
Yeast
probe
PROcess
biomaRt
14.5 years ago
chawla
▴ 190
1,388 results • Page
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Comment: After running samtools, the featureCounts command crashed.
by
eja.gssssse.r.m
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The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type
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eja.gssssse.r.m
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It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
by
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43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
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Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
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Bioconductor 3.22 Released!
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Comment: "Watched Tags" are being erased rather than updated
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