Showing : probe • reset
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diagnosing problems with processing microarray data using lumi package
Microarray probe PROcess convert lumi Microarray probe PROcess convert lumi
14.2 years ago Juliet Hannah ▴ 360
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11
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3.8k
views
GSVA: using Entrez ID's as identifiers
probe GSVA probe GSVA
updated 14.2 years ago by ★ 3.4k • written 14.2 years ago by ▴ 360
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1.0k
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[limma] Unreliable spots - omitting in avereps
probe limma probe limma
14.2 years ago boczniak767 ▴ 740
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1
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1.2k
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problem with frma on U133AAofAv2 platform
probe frma probe frma
updated 14.2 years ago by ▴ 830 • written 14.2 years ago by ▴ 20
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764
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illuminaHumanv4 mappings
probe probe
14.3 years ago Valerie Deffontaine ▴ 10
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4
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1.1k
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Identifying the genome sequence of an affy probe
probe affy probe affy
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 20
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3
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1.3k
views
Probe Coordinates for the Affymetrix U133 2.0 plus array in the UCSC genome browser
probe probe
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 190
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2
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2.6k
views
Installing packages on R v2.13.2, OSX multiple warning messages
Annotation cdf probe affy gcrma Annotation cdf probe affy gcrma
updated 14.3 years ago by 68k • written 14.3 years ago by ★ 13k
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1.2k
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limma suitability for correlated data
Microarray Prostate probe limma Microarray Prostate probe limma
14.3 years ago Max Mariasegaram ▴ 20
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1.8k
views
illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
14.3 years ago Mark Cowley ▴ 910
1
vote
1
reply
1.9k
views
gcrma failed on mouse Gene 1.0 ST array
probe gcrma probe gcrma
updated 14.4 years ago by ★ 4.1k • written 14.4 years ago by ▴ 50
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3
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2.7k
views
collapseRows function
probe probe
updated 14.4 years ago by ▴ 650 • written 14.4 years ago by ▴ 10
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0
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896
views
Lumi problem
probe probe
14.4 years ago de With, Jytte ▴ 10
0
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1
reply
1.3k
views
how to get probe ids??
Microarray probe affy Microarray probe affy
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 40
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1.0k
views
problem with lumiR.batch log2 transformation
probe probe
14.4 years ago Briggs, Chris ▴ 20
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0
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1.8k
views
I: R: R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Preprocessing Breast Prostate probe GLAD Category xps Annotation
14.4 years ago Lavorgna Giovanni ▴ 80
0
votes
4
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2.1k
views
R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 14.4 years ago by ★ 3.9k • written 14.4 years ago by ▴ 80
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4
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1.5k
views
Probe-level analysis of exon arrays using xps
probe xps probe xps
updated 14.5 years ago by ★ 3.9k • written 14.5 years ago by ▴ 80
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2
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1.3k
views
what is the correct way of normalizing 3 different U133 platforms using RMA?
probe probe
updated 14.5 years ago by 68k • written 14.5 years ago by ▴ 450
0
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1
reply
936
views
question regarding RMA on 2 different U133 platforms
probe probe
updated 14.5 years ago by 68k • written 14.5 years ago by ▴ 820
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7
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1.8k
views
matchPDict with mismatches allowed appears to drop names
probe probe
updated 14.5 years ago by 16k • written 14.5 years ago by ▴ 50
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2
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1.4k
views
Fwd: Probe matching using vmatchPDict
Cancer probe Cancer probe
updated 14.5 years ago by ▴ 50 • written 14.5 years ago by 16k
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1
reply
853
views
clustering of probe id
probe probe
updated 14.5 years ago by 68k • written 14.5 years ago by ▴ 50
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0
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1.1k
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
14.5 years ago Viki S ▴ 20
0
votes
1
reply
1.4k
views
Probe matching using vmatchPDict
probe probe
updated 14.5 years ago by 16k • written 14.5 years ago by ▴ 50
0
votes
2
replies
1.7k
views
Probe ID to Sequence
probe probe
14.5 years ago khadeeja ismail ▴ 400
0
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1
reply
1.2k
views
time series, normalize on time 0
probe limma probe limma
14.6 years ago Andrea Grilli ▴ 240
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0
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809
views
RMA Probe summarization for identical probe sequences
probe probe
14.6 years ago Gaj Stan BIGCAT ▴ 20
0
votes
1
reply
1.2k
views
Affymetrix: RMA probe summarization for identical probe sequences
Normalization probe Normalization probe
updated 14.6 years ago by ★ 6.5k • written 14.6 years ago by ▴ 20
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2
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1.9k
views
read.ilmn function query
probe limma a4 probe limma a4
updated 14.6 years ago by 53k • written 14.6 years ago by ▴ 440
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6
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3.1k
views
Library installation: odd error
cdf probe cdf probe
updated 14.6 years ago by ★ 13k • written 14.6 years ago by ▴ 50
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0
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1.1k
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Fwd: Unable to install packages
Microarray Annotation cdf probe cycle Microarray Annotation cdf probe cycle
14.6 years ago James W. MacDonald 68k
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0
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1.2k
views
Timecourse experiment: wrong experimental design?
TimeCourse probe limma timecourse TimeCourse probe limma timecourse
14.6 years ago Andrea Grilli ▴ 240
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2
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1.4k
views
inconsistent CHR mapping- IlluminaHumanMethylation450k.db
Annotation probe convert lumi Annotation probe convert lumi
updated 14.6 years ago by ▴ 30 • written 14.6 years ago by ▴ 10
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1
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1.1k
views
altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
updated 14.6 years ago by 68k • written 14.6 years ago by ▴ 80
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0
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1.2k
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Resend: altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
14.6 years ago Ariel Grostern ▴ 80
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votes
2
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1.3k
views
AnnotationDbi:makeProbePackage for PM-only chips....getting closer.....now error in installation of probe package
cdf probe affy AnnotationDbi cdf probe affy AnnotationDbi
updated 14.6 years ago by 68k • written 14.6 years ago by ▴ 80
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Converting makeProbePackage in AnnotationDbi to permit PM-only arrays
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
14.6 years ago Ariel Grostern ▴ 80
0
votes
6
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2.2k
views
LIMMAing normalized and background corrected MA-data derived by a text file
Microarray Normalization probe Microarray Normalization probe
updated 14.6 years ago by ▴ 190 • written 14.6 years ago by ▴ 50
0
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3
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1.5k
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help with ACME package
probe probe
14.7 years ago Sean Davis 21k
0
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2
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1.8k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
14.7 years ago nac ▴ 280
0
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2
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919
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Creating a figure showing Affy probe-set alignments along a small segment of chromosome
probe graph probe graph
updated 14.7 years ago by 21k • written 14.7 years ago by ▴ 30
0
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1
reply
770
views
Creating a graph showing Affy probe-set alignments along a small segment of chromosome
probe graph probe graph
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 30
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1
reply
913
views
Eliminating Absent Data
probe affy probe affy
updated 14.7 years ago by 68k • written 14.7 years ago by ▴ 40
0
votes
2
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1.4k
views
lumi: estimateMethylationBG problem
Annotation Normalization Cancer probe lumi Annotation Normalization Cancer probe lumi
updated 14.7 years ago by ▴ 620 • written 14.7 years ago by ▴ 440
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0
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1.7k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
14.7 years ago chawla ▴ 190
0
votes
4
replies
1.5k
views
Empty featureData in ExpressionSet generated by affy::justRMA
Annotation hgu133a2 probe affy Annotation hgu133a2 probe affy
updated 14.7 years ago by 68k • written 14.7 years ago by ▴ 30
0
votes
5
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4.6k
views
extract intensity values from AffyBatch
probe probe
updated 14.7 years ago by 68k • written 14.7 years ago by ★ 1.5k
0
votes
2
replies
2.3k
views
Go terms attributes not available on Biomart ensembl
GO probe biomaRt GO probe biomaRt
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 190
0
votes
0
replies
1.5k
views
empty go terms with bioMart
GO Yeast probe PROcess biomaRt GO Yeast probe PROcess biomaRt
14.8 years ago chawla ▴ 190
1,388 results • Page 7 of 28
Recent ...
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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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