Showing : probe • reset
0
votes
0
replies
1.2k
views
diagnosing problems with processing microarray data using lumi package
Microarray probe PROcess convert lumi Microarray probe PROcess convert lumi
14.0 years ago Juliet Hannah ▴ 360
0
votes
11
replies
3.6k
views
GSVA: using Entrez ID's as identifiers
probe GSVA probe GSVA
updated 14.0 years ago by ★ 3.4k • written 14.0 years ago by ▴ 360
0
votes
0
replies
979
views
[limma] Unreliable spots - omitting in avereps
probe limma probe limma
14.0 years ago boczniak767 ▴ 740
0
votes
1
reply
1.1k
views
problem with frma on U133AAofAv2 platform
probe frma probe frma
updated 14.0 years ago by ▴ 830 • written 14.0 years ago by ▴ 20
0
votes
0
replies
740
views
illuminaHumanv4 mappings
probe probe
14.0 years ago Valerie Deffontaine ▴ 10
0
votes
4
replies
1.0k
views
Identifying the genome sequence of an affy probe
probe affy probe affy
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 20
0
votes
3
replies
1.3k
views
Probe Coordinates for the Affymetrix U133 2.0 plus array in the UCSC genome browser
probe probe
updated 14.0 years ago by 68k • written 14.0 years ago by ▴ 190
0
votes
2
replies
2.6k
views
Installing packages on R v2.13.2, OSX multiple warning messages
Annotation cdf probe affy gcrma Annotation cdf probe affy gcrma
updated 14.1 years ago by 68k • written 14.1 years ago by ★ 13k
0
votes
0
replies
1.1k
views
limma suitability for correlated data
Microarray Prostate probe limma Microarray Prostate probe limma
14.1 years ago Max Mariasegaram ▴ 20
0
votes
0
replies
1.7k
views
illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
14.1 years ago Mark Cowley ▴ 910
1
vote
1
reply
1.9k
views
gcrma failed on mouse Gene 1.0 ST array
probe gcrma probe gcrma
updated 14.1 years ago by ★ 4.1k • written 14.1 years ago by ▴ 50
0
votes
3
replies
2.6k
views
collapseRows function
probe probe
updated 14.1 years ago by ▴ 650 • written 14.1 years ago by ▴ 10
0
votes
0
replies
866
views
Lumi problem
probe probe
14.1 years ago de With, Jytte ▴ 10
0
votes
1
reply
1.2k
views
how to get probe ids??
Microarray probe affy Microarray probe affy
updated 14.1 years ago by 68k • written 14.2 years ago by ▴ 40
0
votes
0
replies
1.0k
views
problem with lumiR.batch log2 transformation
probe probe
14.2 years ago Briggs, Chris ▴ 20
0
votes
0
replies
1.8k
views
I: R: R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Preprocessing Breast Prostate probe GLAD Category xps Annotation
14.2 years ago Lavorgna Giovanni ▴ 80
0
votes
4
replies
2.0k
views
R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 14.2 years ago by ★ 3.9k • written 14.2 years ago by ▴ 80
0
votes
4
replies
1.4k
views
Probe-level analysis of exon arrays using xps
probe xps probe xps
updated 14.2 years ago by ★ 3.9k • written 14.2 years ago by ▴ 80
0
votes
2
replies
1.2k
views
what is the correct way of normalizing 3 different U133 platforms using RMA?
probe probe
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 450
0
votes
1
reply
906
views
question regarding RMA on 2 different U133 platforms
probe probe
updated 14.2 years ago by 68k • written 14.2 years ago by ▴ 820
0
votes
7
replies
1.7k
views
matchPDict with mismatches allowed appears to drop names
probe probe
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 50
0
votes
2
replies
1.3k
views
Fwd: Probe matching using vmatchPDict
Cancer probe Cancer probe
updated 14.3 years ago by ▴ 50 • written 14.3 years ago by 16k
0
votes
1
reply
799
views
clustering of probe id
probe probe
updated 14.3 years ago by 68k • written 14.3 years ago by ▴ 50
0
votes
0
replies
1.1k
views
filterMicroRna function of AgiMicroRna for filtering by sample replicates
probe microRNA AgiMicroRna probe microRNA AgiMicroRna
14.3 years ago Viki S ▴ 20
0
votes
1
reply
1.3k
views
Probe matching using vmatchPDict
probe probe
updated 14.3 years ago by 16k • written 14.3 years ago by ▴ 50
0
votes
2
replies
1.6k
views
Probe ID to Sequence
probe probe
14.3 years ago khadeeja ismail ▴ 400
0
votes
1
reply
1.2k
views
time series, normalize on time 0
probe limma probe limma
14.3 years ago Andrea Grilli ▴ 240
0
votes
0
replies
773
views
RMA Probe summarization for identical probe sequences
probe probe
14.3 years ago Gaj Stan BIGCAT ▴ 20
0
votes
1
reply
1.1k
views
Affymetrix: RMA probe summarization for identical probe sequences
Normalization probe Normalization probe
updated 14.3 years ago by ★ 6.5k • written 14.3 years ago by ▴ 20
0
votes
2
replies
1.8k
views
read.ilmn function query
probe limma a4 probe limma a4
updated 14.3 years ago by 53k • written 14.3 years ago by ▴ 440
0
votes
6
replies
3.0k
views
Library installation: odd error
cdf probe cdf probe
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ▴ 50
0
votes
0
replies
1.0k
views
Fwd: Unable to install packages
Microarray Annotation cdf probe cycle Microarray Annotation cdf probe cycle
14.3 years ago James W. MacDonald 68k
0
votes
0
replies
1.1k
views
Timecourse experiment: wrong experimental design?
TimeCourse probe limma timecourse TimeCourse probe limma timecourse
14.3 years ago Andrea Grilli ▴ 240
0
votes
2
replies
1.3k
views
inconsistent CHR mapping- IlluminaHumanMethylation450k.db
Annotation probe convert lumi Annotation probe convert lumi
updated 14.3 years ago by ▴ 30 • written 14.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 80
0
votes
0
replies
1.1k
views
Resend: altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
14.4 years ago Ariel Grostern ▴ 80
0
votes
2
replies
1.3k
views
AnnotationDbi:makeProbePackage for PM-only chips....getting closer.....now error in installation of probe package
cdf probe affy AnnotationDbi cdf probe affy AnnotationDbi
updated 14.4 years ago by 68k • written 14.4 years ago by ▴ 80
0
votes
0
replies
1.3k
views
Converting makeProbePackage in AnnotationDbi to permit PM-only arrays
cdf probe affy altcdfenvs cdf probe affy altcdfenvs
14.4 years ago Ariel Grostern ▴ 80
0
votes
6
replies
2.0k
views
LIMMAing normalized and background corrected MA-data derived by a text file
Microarray Normalization probe Microarray Normalization probe
updated 14.4 years ago by ▴ 190 • written 14.4 years ago by ▴ 50
0
votes
3
replies
1.4k
views
help with ACME package
probe probe
14.4 years ago Sean Davis 21k
0
votes
2
replies
1.7k
views
DNA copy ploting function
probe DNAcopy probe DNAcopy
14.4 years ago nac ▴ 280
0
votes
2
replies
884
views
Creating a figure showing Affy probe-set alignments along a small segment of chromosome
probe graph probe graph
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 30
0
votes
1
reply
702
views
Creating a graph showing Affy probe-set alignments along a small segment of chromosome
probe graph probe graph
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 30
0
votes
1
reply
876
views
Eliminating Absent Data
probe affy probe affy
updated 14.5 years ago by 68k • written 14.5 years ago by ▴ 40
0
votes
2
replies
1.3k
views
lumi: estimateMethylationBG problem
Annotation Normalization Cancer probe lumi Annotation Normalization Cancer probe lumi
updated 14.5 years ago by ▴ 620 • written 14.5 years ago by ▴ 440
0
votes
0
replies
1.7k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
14.5 years ago chawla ▴ 190
0
votes
4
replies
1.5k
views
Empty featureData in ExpressionSet generated by affy::justRMA
Annotation hgu133a2 probe affy Annotation hgu133a2 probe affy
updated 14.5 years ago by 68k • written 14.5 years ago by ▴ 30
0
votes
5
replies
4.4k
views
extract intensity values from AffyBatch
probe probe
updated 14.5 years ago by 68k • written 14.5 years ago by ★ 1.5k
0
votes
2
replies
2.2k
views
Go terms attributes not available on Biomart ensembl
GO probe biomaRt GO probe biomaRt
updated 14.5 years ago by ★ 13k • written 14.5 years ago by ▴ 190
0
votes
0
replies
1.4k
views
empty go terms with bioMart
GO Yeast probe PROcess biomaRt GO Yeast probe PROcess biomaRt
14.5 years ago chawla ▴ 190
1,388 results • Page 7 of 28
Recent ...
Replies
Comment: After running samtools, the featureCounts command crashed. by eja.gssssse.r.m • 0
The buffer overflow detected error in your featureCount step usually indicates that the program is trying to write more data into memory …
Comment: gene Set with high AUC score but no cells assigned to cell type by eja.gssssse.r.m • 0
It sounds like your AUCell results may be showing high AUC scores without cell assignment due to thresholding or scoring cutoffs. Think of …
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Popular Question to shepherl 4.2k
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Popular Question to Ou, Jianhong ★ 1.3k
Locations • All
The city by the bay, just now
United States, 1 minute ago
United States, 26 minutes ago
WEHI, Melbourne, Australia, 41 minutes ago
Mexico, 59 minutes ago
Traffic: 1063 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6