Showing : probe • reset
0
votes
2
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2.9k
views
Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 13.6 years ago by ★ 1.9k • written 13.6 years ago by ▴ 230
0
votes
3
replies
2.2k
views
Affymetrix Intronic Normalization Control Probes Differentially Expressed?
probe limma Category probe limma Category
updated 13.6 years ago by 68k • written 13.6 years ago by ▴ 10
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0
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1.1k
views
Question about limma package
probe limma probe limma
13.6 years ago Anna Dvorkin ▴ 40
1
vote
2
replies
8.3k
views
LIMMA - summarization of Illumina probes for same gene
probe affy limma beadarray probe affy limma beadarray
updated 13.7 years ago by ▴ 180 • written 13.7 years ago by 53k
0
votes
1
reply
941
views
Problem with Bimap objects
GO mgug4122a probe GO mgug4122a probe
updated 13.7 years ago by ★ 1.1k • written 13.7 years ago by ▴ 30
0
votes
0
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1.3k
views
aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
13.7 years ago Emilie Lalonde ▴ 10
0
votes
5
replies
1.5k
views
how to rank affy probesets by their probe-effect magnitude
probe affy affyPLM probe affy affyPLM
updated 13.7 years ago by 68k • written 13.7 years ago by ★ 3.4k
0
votes
0
replies
931
views
IlluminaMousev2.db probe quality information questions?
Alignment Annotation probe convert Alignment Annotation probe convert
13.7 years ago Mark Dunning ★ 1.1k
0
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0
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1.1k
views
Use probesets with highest baseline expression for differntial gene
Annotation probe limma Annotation probe limma
13.7 years ago Ekta Jain ▴ 370
0
votes
0
replies
987
views
GAGE Question
probe biomaRt gage probe biomaRt gage
13.7 years ago Javerjung Sandhu ▴ 200
0
votes
2
replies
2.3k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 13.7 years ago by ▴ 280 • written 13.7 years ago by ▴ 740
0
votes
0
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1.4k
views
Updated affy package? ReadAffy/ AffyBatch has changed and breaks my pipeline!
Cancer cdf probe affy gcrma AnnotationDbi Cancer cdf probe affy gcrma AnnotationDbi
13.7 years ago Benjamin Otto ▴ 830
0
votes
0
replies
2.0k
views
Deferential gene expression databases
Microarray Genetics Annotation Normalization Pathways GO Cancer BSgenome probe annotate
13.7 years ago saikouy bah ▴ 30
0
votes
3
replies
3.1k
views
how to remove affymetrix control probe sets from a an expression set
probe probe
13.7 years ago Salwa Eid ▴ 100
0
votes
1
reply
1.4k
views
AB Rat Genome Survey Microarray
probe ABarray probe ABarray
13.7 years ago Iain Gallagher ▴ 930
0
votes
1
reply
1.2k
views
IlluminaMousev2.db probe quality information questions?
probe convert probe convert
13.7 years ago Lourdes Peña Castillo ▴ 140
0
votes
1
reply
879
views
Probe include snp in HG-U133_Plus_2
SNP probe SNP probe
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 970
0
votes
2
replies
1.1k
views
Two populations on microarray
Microarray Normalization GO probe limma Microarray Normalization GO probe limma
updated 13.7 years ago by ★ 6.0k • written 13.8 years ago by ▴ 60
1
vote
1
reply
2.4k
views
Removing probes with low variance across samples (Infinium 450k)
probe genefilter probe genefilter
updated 13.7 years ago by ★ 4.2k • written 13.7 years ago by ▴ 400
0
votes
0
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1.3k
views
Issues with AgiMicroRna filtering step (Error in is(ddNORM, "uRNAList") : object 'ddNORM' not found)
probe AgiMicroRna probe AgiMicroRna
13.8 years ago Karthik K N ▴ 200
0
votes
2
replies
1.1k
views
Updated affy package? ReadAffy/ AffyBatch has changed and breaks my pipeline!
probe AnnotationDbi probe AnnotationDbi
updated 13.8 years ago by 68k • written 13.8 years ago by ▴ 10
0
votes
13
replies
2.7k
views
Loading quantiles normalized root data in XPS
probe affy xps probe affy xps
updated 13.8 years ago by ★ 3.9k • written 13.8 years ago by ★ 1.3k
0
votes
1
reply
1.6k
views
CNTools error message
CGH probe DNAcopy CGH probe DNAcopy
updated 13.8 years ago by 25k • written 13.8 years ago by ▴ 280
0
votes
1
reply
821
views
Saureus.db Files
probe affy probe affy
updated 13.8 years ago by 6.7k • written 13.8 years ago by ▴ 200
0
votes
3
replies
1.0k
views
miRNA normalisation
GO probe GO probe
updated 13.8 years ago by 68k • written 13.8 years ago by ▴ 40
0
votes
0
replies
884
views
[lumi] 450k methylation color correction issue.
probe probe
13.8 years ago Geoff Woodward ▴ 30
0
votes
0
replies
1.5k
views
How to make a custom cdf file?
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
13.8 years ago Olivier Lucas ▴ 40
0
votes
4
replies
2.0k
views
Summarizing two-channel data (RGList, MAList) for limma analysis
Normalization probe affy Normalization probe affy
updated 13.8 years ago by ▴ 90 • written 13.8 years ago by ▴ 290
0
votes
1
reply
2.4k
views
limma topTable with gene symbols in output: annotate problem
Annotation cdf probe annotate affy limma biomaRt Annotation cdf probe annotate affy
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 290
0
votes
1
reply
936
views
Saureus Affy Chip
probe affy limma convert probe affy limma convert
updated 13.8 years ago by ★ 7.2k • written 13.8 years ago by ▴ 200
0
votes
1
reply
905
views
How remove controls probes - Affymetrix Gene
GO probe oligo GO probe oligo
updated 13.8 years ago by 68k • written 13.8 years ago by ★ 13k
0
votes
0
replies
1.8k
views
displaying clustering results in TreeView or MapleTree
Microarray Clustering Kidney Ovarian probe hopach Microarray Clustering Kidney Ovarian
13.8 years ago Mark Baumeister ▴ 40
0
votes
0
replies
626
views
Affymetrix Gene array probe coordinates, mogene10stv1probe
probe biomaRt probe biomaRt
13.8 years ago Guest User ★ 13k
0
votes
3
replies
1.7k
views
Problems selecting rows from dataframe (exprs) of GNF Atlas data....
GO probe GEOquery GO probe GEOquery
updated 13.8 years ago by ▴ 60 • written 13.8 years ago by ▴ 150
0
votes
3
replies
1.5k
views
Problems selecting rows from dataframe (exprs) of GNF Atlas data....
GO probe GEOquery GO probe GEOquery
updated 13.8 years ago by ▴ 60 • written 13.8 years ago by ▴ 150
0
votes
0
replies
709
views
Bioconductor Digest, Vol 107, Issue 1
SNP Annotation probe affy biomaRt IRanges SNP Annotation probe affy biomaRt IRanges
13.9 years ago Peter Haverty ▴ 20
0
votes
1
reply
3.0k
views
GB_ACC to Entrez ids
Microarray Annotation probe convert Microarray Annotation probe convert
updated 13.9 years ago by 6.7k • written 13.9 years ago by ▴ 570
0
votes
0
replies
942
views
mapping snp array probe to a gene, biomaRt or others?
Annotation probe affy Annotation probe affy
13.9 years ago Xiaokuan Wei ▴ 230
0
votes
1
reply
1.0k
views
lumiHumanAll.db - wrong information in lumiHumanAllCHR for some probes?
Cancer probe Cancer probe
updated 13.9 years ago by 6.7k • written 13.9 years ago by ▴ 740
0
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0
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1.6k
views
lumi and 450k control probe files
probe PROcess lumi probe PROcess lumi
13.9 years ago Oliver Hofmann ▴ 50
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 106, Issue 21
SNP Microarray VariantAnnotation Annotation cdf probe affy limma PROcess oligo xps SNP
13.9 years ago Jing Huang ▴ 380
0
votes
1
reply
1.4k
views
Affymetrix Mouse Gene 1.0 ST - Number of probes
Annotation cdf probe Annotation cdf probe
updated 13.9 years ago by 68k • written 13.9 years ago by ★ 13k
0
votes
0
replies
1.0k
views
HTqPCR package
qPCR probe qPCR probe
13.9 years ago Heidi Dvinge ★ 2.0k
0
votes
0
replies
946
views
Extracting PROBE_ID from lumiBatch
Annotation probe convert Annotation probe convert
13.9 years ago Pan Du ▴ 440
0
votes
0
replies
819
views
Extracting PROBE_ID from lumiBatch
probe probe
13.9 years ago Thomas Hampton ▴ 750
0
votes
1
reply
1.8k
views
Summarising Probe Sets for Agilent 4x44 Arrays
Clustering probe PROcess Clustering probe PROcess
updated 13.9 years ago by ▴ 80 • written 13.9 years ago by ▴ 10
0
votes
2
replies
1.2k
views
some basic questions
Microarray Annotation Normalization cdf probe cycle Microarray Annotation Normalization
updated 13.9 years ago by ★ 2.0k • written 13.9 years ago by ▴ 40
0
votes
1
reply
762
views
Probe level normalization
Normalization probe affy limma Normalization probe affy limma
updated 13.9 years ago by 68k • written 13.9 years ago by ▴ 40
0
votes
2
replies
870
views
Probe level normalization
probe limma probe limma
updated 13.9 years ago by 68k • written 13.9 years ago by ▴ 40
0
votes
1
reply
1.1k
views
Affy U133 array CEL files - how can i see individual probe signals?
probe affy probe affy
updated 14.0 years ago by 21k • written 14.0 years ago by ★ 13k
1,388 results • Page 6 of 28
Recent ...
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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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Popular Question to Fred Hutch (Recruiting) ▴ 40
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