Showing : process • reset
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SNP array packages
SNP Microarray PROcess SNP Microarray PROcess
updated 19.8 years ago by ▴ 290 • written 19.8 years ago by ▴ 20
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goCluster results
Annotation PROcess goCluster Annotation PROcess goCluster
19.8 years ago kfbargad@ehu.es ▴ 270
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AnnBuilder subscript out of bounds error
Microarray Genetics Annotation GO probe AnnBuilder PROcess Microarray Genetics Annotation
updated 19.8 years ago by ▴ 780 • written 19.8 years ago by ▴ 20
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Issues with BioC GO annotations and NetAffx
Annotation GO probe affy PROcess GOstats Category Annotation GO probe affy PROcess
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 110
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BioC annotations for mgug4122a
Annotation PROcess Annotation PROcess
updated 19.9 years ago by ▴ 780 • written 19.9 years ago by ▴ 20
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1
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809
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[Fwd: BioC annotations for mgug4122a]
Annotation PROcess Annotation PROcess
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ★ 1.3k
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12
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3.0k
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Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
19.9 years ago michael watson IAH-C ★ 3.4k
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normalization of duplicate spots
Normalization vsn limma PROcess Normalization vsn limma PROcess
19.9 years ago Jianping Jin ▴ 890
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exprSets from SMD data
PROcess PROcess
20.0 years ago Jeff Gentry ★ 3.9k
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1.4k
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RNA degradation problem
Normalization affy limma affyPLM PROcess Normalization affy limma affyPLM PROcess
updated 20.0 years ago by ▴ 810 • written 20.0 years ago by ▴ 940
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MixtureCDF
Cancer hgu133a2 hgu133a cdf PROcess Cancer hgu133a2 hgu133a cdf PROcess
20.0 years ago Jack Zhu ▴ 30
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687
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normexp (limma) failure?
affy limma PROcess affy limma PROcess
20.1 years ago Gordon Smyth 53k
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Again on heatmap clusters - dChip style, Pearson's distance. Which solutions ?
Clustering PROcess Clustering PROcess
updated 20.1 years ago by ★ 1.8k • written 20.1 years ago by ▴ 540
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5
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averaging replicates within arrays
Microarray Normalization limma PROcess Microarray Normalization limma PROcess
updated 20.2 years ago by ★ 6.0k • written 20.2 years ago by ▴ 310
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averaging replicates within arrays
Normalization limma PROcess Normalization limma PROcess
20.2 years ago Gordon Smyth 53k
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12
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3.2k
views
Rgraphviz load problem
Rgraphviz PROcess Rgraphviz PROcess
updated 20.2 years ago by ★ 7.4k • written 20.2 years ago by ★ 3.9k
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652
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letters of support
Cancer PROcess Cancer PROcess
20.3 years ago rgentleman ★ 5.5k
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Design and normalization of focused arrays
Normalization limma PROcess Normalization limma PROcess
20.3 years ago Gordon Smyth 53k
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1
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1.3k
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some experiences and some troubles with GraphAT package
GO graph PROcess GraphAT GO graph PROcess GraphAT
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ▴ 70
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ABPkgBuilder Error; Again
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
20.4 years ago Barry Henderson ▴ 250
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4
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1.5k
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ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 20.4 years ago by ★ 7.4k • written 20.4 years ago by ▴ 250
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1.2k
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Job: Computational Biology Group at FHCRC is hiring
Infrastructure Cancer PROcess Infrastructure Cancer PROcess
20.5 years ago Seth Falcon ★ 7.4k
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1
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1.2k
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making a cdf environment
cdf affy PROcess cdf affy PROcess
updated 20.5 years ago by 68k • written 20.5 years ago by ▴ 10
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977
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The package gcrma downloaded from Bioconductor cannot run in my linux machine
PROcess PROcess
20.5 years ago Qian Li ▴ 10
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1.1k
views
NRC Postdoctoral Research Associateships at NIST
Microarray PROcess Microarray PROcess
20.6 years ago Marc Salit ▴ 80
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818
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ArrayQuest at MUSC
Microarray PROcess Microarray PROcess
20.6 years ago Gary Argraves ▴ 10
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2
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1.3k
views
Ruuid requires specific MAKEFLAGS setting on Fedora Core 2
Ruuid Rgraphviz PROcess Ruuid Rgraphviz PROcess
updated 20.6 years ago by ▴ 80 • written 20.6 years ago by ▴ 70
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931
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Re: Use of RMA in increasingly-sized datasets
Normalization probe PROcess Normalization probe PROcess
updated 20.6 years ago by ▴ 60 • written 20.6 years ago by ▴ 50
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1.3k
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Use of RMA in increasingly-sized datasets
Cancer affy PROcess Cancer affy PROcess
updated 20.6 years ago by ▴ 230 • written 20.6 years ago by ▴ 110
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1.1k
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using nlme correlation structures in limma?
PROcess PROcess
updated 20.6 years ago by 53k • written 20.6 years ago by ▴ 320
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2.6k
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affycomp, *.CEL and *.CSV files
affycomp PROcess affycomp PROcess
20.7 years ago Mohammad Esad-Djou ▴ 520
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Golub's 1999 article CEL files
PROcess PROcess
20.7 years ago Eric Paquet ▴ 10
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3
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1.6k
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Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 20.7 years ago by ▴ 760 • written 20.7 years ago by 53k
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1.4k
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Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
20.7 years ago Diego Diez ▴ 760
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965
views
Re: Rghraphviz
Rgraphviz PROcess Rgraphviz PROcess
20.7 years ago Seth Falcon ★ 7.4k
0
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1
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990
views
probe alignment clustering
Annotation affy PROcess Annotation affy PROcess
updated 20.8 years ago by 21k • written 20.8 years ago by ▴ 80
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loged data or not loged previous to use normalize.quantile
Normalization limma PROcess Normalization limma PROcess
20.8 years ago Gordon Smyth 53k
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1
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1.3k
views
MAGE-ML reading
RMAGEML PROcess marray SJava RMAGEML PROcess marray SJava
updated 20.8 years ago by 21k • written 20.8 years ago by 6.7k
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rma on new samples
Classification probe Biobase affy PROcess Classification probe Biobase affy PROcess
20.8 years ago Kuhn, Max ▴ 70
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793
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Re: [R] Installing GO 1.7.0
GO PROcess GO PROcess
20.8 years ago Seth Falcon ★ 7.4k
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636
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Question about Probes
probe PROcess probe PROcess
20.8 years ago hrishikesh deshmukh ▴ 420
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1
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1.1k
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plier crashes with 51 CEL files
gcrma PROcess plier gcrma PROcess plier
20.8 years ago Adaikalavan Ramasamy ★ 1.8k
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1.8k
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asking for some code
PROcess PROcess
20.9 years ago zhihua li ▴ 120
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1
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983
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Installing R
GO GUI PROcess GO GUI PROcess
updated 20.9 years ago by ▴ 430 • written 20.9 years ago by ▴ 10
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4
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1.9k
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Anyone have a GO slim list for Affy HG-U133A or HG-U133Av2?
Annotation GO annotate affy PROcess Category cycle Annotation GO annotate affy PROcess
updated 20.9 years ago by ▴ 310 • written 20.9 years ago by ▴ 250
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0
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1.9k
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Internationalization and localization of R
PROcess convert PROcess convert
20.9 years ago ripley@stats.ox.ac.uk ▴ 50
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1.0k
views
what linux version for Affy chip analysis
PROcess PROcess
updated 21.0 years ago by ▴ 180 • written 21.0 years ago by ▴ 320
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1
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717
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memory problem
hgu133plus2 PROcess hgu133plus2 PROcess
updated 21.0 years ago by ★ 13k • written 21.0 years ago by ▴ 320
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2
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1.1k
views
Installation memory demands (GO, humanLLMappings)
GO PROcess GO PROcess
updated 21.0 years ago by ▴ 50 • written 21.0 years ago by ▴ 70
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0
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745
views
Update on Bioconductor website changes
PROcess PROcess
21.0 years ago Seth Falcon ★ 7.4k
651 results • Page 11 of 14
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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