Showing : process • reset
0
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3.5k
views
Pathview+GAGE workflow on RNA-seq data pathway analysis and visualization (was: Pathview published in Bioinformatics)
Annotation Pathways Visualization graph PROcess gage pathview Annotation Pathways graph
12.4 years ago Luo Weijun ★ 1.6k
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1.2k
views
Suggestion - gene set enrichment of genes against BP and Disease gene sets
Microarray PROcess Microarray PROcess
12.4 years ago Bade ▴ 310
2
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4
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7.3k
views
Too many (?) differentially expressed genes - edgeR and DESeq
PROcess edgeR DESeq PROcess edgeR DESeq
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 130
0
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3
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1.7k
views
Normalize background on marray Agilent object
Normalization limma PROcess marray Normalization limma PROcess marray
updated 12.5 years ago by 53k • written 12.5 years ago by ▴ 50
0
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1
reply
1.3k
views
DEXSeq Help Needed: newExonCountSet() error messages
PROcess DEXSeq PROcess DEXSeq
updated 12.5 years ago by ★ 13k • written 12.5 years ago by ▴ 150
0
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0
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2.3k
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info on pathview
graph PROcess pathview graph PROcess pathview
12.5 years ago Luo Weijun ★ 1.6k
0
votes
0
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1.4k
views
edgeR: very low p-value and very high variance within the group of replicates
limma PROcess edgeR limma PROcess edgeR
12.5 years ago Gordon Smyth 53k
0
votes
0
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1.2k
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goseq and transcript length
Annotation GO PROcess goseq Annotation GO PROcess goseq
12.6 years ago Xulong Wang ▴ 10
0
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1
reply
2.1k
views
goseq and transcript length data
Annotation GO PROcess goseq Annotation GO PROcess goseq
updated 12.6 years ago by ▴ 320 • written 12.6 years ago by ★ 13k
0
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9
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2.7k
views
beadarray - combining swath files
PROcess beadarray PROcess beadarray
updated 12.6 years ago by ★ 1.1k • written 12.6 years ago by ▴ 70
0
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1.7k
views
using beadarray to process iscan expression data - error using readIllumina()
PROcess beadarray PROcess beadarray
12.6 years ago Darren Plant ▴ 70
0
votes
3
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2.9k
views
DEXSeq Issue
Alignment Annotation GO Homo sapiens TranscriptDb PROcess GenomicFeatures DEXSeq Alignment
updated 12.6 years ago by 43k • written 12.6 years ago by ▴ 150
0
votes
1
reply
2.1k
views
DEXSeq Problems
Alignment Homo sapiens PROcess Alignment Homo sapiens PROcess
updated 12.6 years ago by ★ 3.8k • written 12.6 years ago by ▴ 150
0
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0
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1.6k
views
How do I background correct an Illumina eset without using lumiB
Microarray probe limma PROcess convert beadarray lumi Microarray probe limma PROcess
12.6 years ago Gordon Smyth 53k
0
votes
1
reply
1.7k
views
How do I background correct an Illumina eset without using lumiB?
Microarray probe PROcess convert beadarray lumi Microarray probe PROcess convert lumi
updated 12.6 years ago by ▴ 440 • written 12.6 years ago by ★ 13k
0
votes
7
replies
3.9k
views
VariantAnnotation: Performance and memory issues in readVcf
VariantAnnotation PROcess Rsamtools VariantAnnotation VariantAnnotation PROcess Rsamtools
updated 12.6 years ago by 6.7k • written 12.6 years ago by ▴ 300
0
votes
1
reply
1.8k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization hgu133a probe affy PROcess SCAN.UPC Normalization hgu133a probe affy
updated 12.6 years ago by ▴ 20 • written 12.6 years ago by ▴ 600
0
votes
3
replies
1.5k
views
Deleting object rows while looping - II
Coverage Alignment Cancer PROcess Coverage Alignment Cancer PROcess
updated 12.7 years ago by ★ 13k • written 12.7 years ago by 16k
0
votes
3
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1.9k
views
Deleting object rows while looping - II
Coverage Alignment PROcess Coverage Alignment PROcess
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 90
0
votes
0
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1.3k
views
RNAseq analyses: to use, or not use, all the samples; that's the question.
PROcess edgeR DESeq PROcess edgeR DESeq
12.7 years ago Aaron Mackey ▴ 200
0
votes
5
replies
2.5k
views
Question regarding cellhts2 output
Normalization Visualization PROcess cellHTS2 ASSIGN Normalization Visualization PROcess
12.8 years ago • updated 12.7 years ago maziz@tgen.org ▴ 70
0
votes
2
replies
1.7k
views
BitSeq transcript IDs
Alignment PROcess BitSeq Alignment PROcess BitSeq
updated 12.7 years ago by ▴ 30 • written 12.7 years ago by ▴ 70
0
votes
6
replies
1.7k
views
definition for intergenic SNPs in locateVariants function
PROcess PROcess
12.8 years ago • updated 12.7 years ago Adaikalavan Ramasamy ▴ 220
0
votes
1
reply
1.4k
views
BitSeq getExpression crash
Alignment PROcess BitSeq Alignment PROcess BitSeq
updated 12.8 years ago by ▴ 70 • written 12.8 years ago by ▴ 30
0
votes
0
replies
1.5k
views
MCS & ChemineR
Network Clustering PROcess ChemmineR Network Clustering PROcess ChemmineR
12.8 years ago Thomas Girke ★ 1.7k
0
votes
5
replies
2.7k
views
yieldSize and paired end data in SummarizeOverlaps error?
BSgenome PROcess BSgenome ASSIGN BSgenome PROcess BSgenome ASSIGN
updated 12.8 years ago by ★ 6.8k • written 12.8 years ago by ▴ 10
3
votes
3
replies
1.9k
views
EBImage: filtering in the presence of NAs
PROcess EBImage PROcess EBImage
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ▴ 60
0
votes
4
replies
1.0k
views
biocLite and unknown svn revision
PROcess PROcess
updated 12.8 years ago by 25k • written 12.8 years ago by ★ 11k
0
votes
17
replies
9.5k
views
Analysis of Affymetrix Mouse Gene 2.0 ST arrays
Annotation Normalization GO PROcess oligo Annotation Normalization GO PROcess oligo
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 100
0
votes
0
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2.1k
views
AgiMicroRna for new Agilent Chip format
Microarray GO limma PROcess microRNA AgiMicroRna Microarray GO limma PROcess microRNA
12.9 years ago Gordon Smyth 53k
0
votes
1
reply
1.1k
views
Difference between number of probes and number of data rows using 'oligo' on Affy miRNA v3.0 arrays
probe PROcess probe PROcess
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 10
0
votes
0
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1.7k
views
How can I use the information from an ADF [Array Design File] file for microarray normalization?
Normalization cdf PROcess convert Normalization cdf PROcess convert
12.9 years ago Christoph Geisenberger ▴ 10
0
votes
3
replies
2.5k
views
runSPIA() in graphite package
Pathways Breast siggenes PROcess cycle graphite Pathways Breast siggenes PROcess cycle
updated 12.9 years ago by ▴ 20 • written 12.9 years ago by ▴ 420
0
votes
1
reply
2.2k
views
limma-voom and y$E
Normalization limma PROcess Normalization limma PROcess
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 240
0
votes
0
replies
1.6k
views
how to supply a vector/list of results to GenTable in topGO?
GO PROcess topGO GO PROcess topGO
12.9 years ago Adrian Alexa ▴ 400
0
votes
0
replies
1.5k
views
FlowCore - reading in flowSets
FlowCytometry PROcess flowCore FlowCytometry PROcess flowCore
12.9 years ago Pieter Coussement ▴ 30
0
votes
8
replies
3.0k
views
normalization of illumina bead array data
PROcess PROcess
updated 13.0 years ago by ▴ 90 • written 13.0 years ago by ★ 3.6k
0
votes
5
replies
3.4k
views
parallel and GSVA
PROcess GSVA PROcess GSVA
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 130
0
votes
0
replies
1.0k
views
detailed analysis process of Comparisons Both Between and Within Subjects of edgeR
PROcess edgeR PROcess edgeR
13.0 years ago Gordon Smyth 53k
0
votes
4
replies
3.0k
views
minfi - how to subset a GenomicMethylSet by chromosome/seqname
Microarray Annotation PROcess minfi Microarray Annotation PROcess minfi
updated 13.0 years ago by ★ 4.2k • written 13.0 years ago by ▴ 30
0
votes
1
reply
1.1k
views
IMA Peak Correction Error - subscript out of bounds
Annotation PROcess Annotation PROcess
updated 13.0 years ago by ★ 8.2k • written 13.0 years ago by ★ 13k
0
votes
0
replies
785
views
detailed analysis process of "Comparisons Both Between and Within Subjects" of edgeR
PROcess edgeR PROcess edgeR
13.0 years ago Huajing Teng ▴ 20
0
votes
1
reply
1.4k
views
normalization of illumina bead array data
PROcess PROcess
13.0 years ago Michele ▴ 90
0
votes
0
replies
1.2k
views
[Bioconductor] normalization of illumina bead array data
PROcess PROcess
13.0 years ago Michele ▴ 90
0
votes
5
replies
2.1k
views
oligo package
Microarray Annotation annotate PROcess Microarray Annotation annotate PROcess
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
0
votes
1
reply
1.7k
views
edgeR:Differences in results between two different versions of edgeR
PROcess edgeR PROcess edgeR
updated 13.1 years ago by 53k • written 13.1 years ago by ▴ 60
0
votes
7
replies
4.4k
views
Weird things happening with minfi and RcppEigen
PROcess minfi PROcess minfi
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 440
0
votes
3
replies
3.5k
views
Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 13.1 years ago by 21k • written 13.1 years ago by ▴ 300
0
votes
0
replies
1.5k
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
13.1 years ago Guest User ★ 13k
0
votes
2
replies
1.9k
views
frma for Nimblegen arrays?
Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 260
651 results • Page 3 of 14
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Error in SummarizedExperiment(assays = SimpleList(counts = countData)
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