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get synthetic exon dataset with easyRNASeq
RNASeq Alignment Annotation Normalization GO PROcess GenomicRanges DEXSeq easyRNASeq GO
13.2 years ago delhomme@embl.de ★ 1.2k
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1.8k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
13.2 years ago McGee, Monnie ▴ 300
0
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1
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989
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a question about the low level match function
PROcess PROcess
updated 13.2 years ago by ▴ 590 • written 13.2 years ago by ★ 2.0k
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Removing overlapping genes from annotation for RNAseq read count
RNASeq Annotation PROcess DESeq RNASeq Annotation PROcess DESeq
13.2 years ago Guest User ★ 13k
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4
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2.4k
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KEGGgraph
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13.2 years ago Ricardo Silva ▴ 110
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5
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2.0k
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frma for Nimblegen arrays?
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updated 13.2 years ago by ▴ 830 • written 13.2 years ago by ▴ 260
0
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922
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annotation package building
Annotation Organism PROcess Annotation Organism PROcess
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ▴ 60
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0
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1.9k
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450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation db0 probe annotate PROcess GenomicFeatures GenomicRanges Annotation db0 probe
13.2 years ago Marc Carlson ★ 7.2k
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1.2k
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get synthetic exon dataset with easyRNASeq
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13.2 years ago delhomme@embl.de ★ 1.2k
0
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3
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1.3k
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DEXSeq offset term
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updated 13.3 years ago by ★ 1.9k • written 13.3 years ago by ★ 13k
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warnings on easyRNASeq package
Annotation Organism PROcess GenomicRanges easyRNASeq Annotation Organism PROcess
updated 13.3 years ago by ▴ 10 • written 13.3 years ago by ★ 1.2k
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(microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file
Microarray PROcess affylmGUI Microarray PROcess affylmGUI
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 30
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
13.4 years ago Seyed Ahmad Mousavi ▴ 10
0
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920
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readPositonalinfo
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updated 13.4 years ago by ★ 1.6k • written 13.4 years ago by ▴ 30
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1
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1.2k
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readPositionalInfo
PROcess PROcess
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 30
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Problem with addGeneIDs and org.Sc.sgd.db
Annotation PROcess Annotation PROcess
updated 13.4 years ago by ★ 7.2k • written 13.4 years ago by ▴ 50
0
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5
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1.8k
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Visualizing the region of classification uncertainty on thresholded images
PROcess PROcess
updated 13.4 years ago by ▴ 650 • written 13.4 years ago by ★ 13k
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biomaRt 'Please report this to the mailing list'
PROcess biomaRt PROcess biomaRt
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 170
0
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edgeR- data for case studies
SAGE PROcess edgeR SAGE PROcess edgeR
updated 13.4 years ago by ▴ 140 • written 13.4 years ago by 53k
0
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0
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892
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edgeR- data for case studies
PROcess edgeR PROcess edgeR
13.5 years ago Johnson, Franklin Theodore ▴ 140
0
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5
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3.0k
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EasyRNASeq issue (missing bai files)
GO PROcess DESeq easyRNASeq GO PROcess DESeq easyRNASeq
updated 13.5 years ago by ▴ 10 • written 13.5 years ago by ★ 1.2k
0
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0
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1.6k
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SRAdb: differences between the database and the NCBI website
PROcess SRAdb PROcess SRAdb
13.5 years ago Ben Woodcroft ▴ 40
0
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0
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791
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Illumnia Filtering
Sequencing PROcess Sequencing PROcess
13.5 years ago Fatemehsadat Seyednasrollah ▴ 260
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1
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1.3k
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SWAN normalization for HumanMethylation450K - minfi
Normalization PROcess minfi Normalization PROcess minfi
13.5 years ago Lucia Lam ▴ 20
0
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1.4k
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miRNA exiqon panels and HTqPCR
miRNA qPCR PROcess HTqPCR miRNA qPCR PROcess HTqPCR
13.5 years ago Heidi Dvinge ★ 2.0k
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1
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2.3k
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GEOquery, GSEMatrix parameter and lifecycle of GEO series data
GO Biobase PROcess GEOquery GO Biobase PROcess GEOquery
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 440
0
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3
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2.2k
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GEOquery, GSEMatrix parameter and lifecycle of GEO series data
PROcess GEOquery PROcess GEOquery
13.5 years ago Gustavo Fernández Bayón ▴ 440
0
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6
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1.7k
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readGapppedAlignmentpairs questions
Coverage PROcess Coverage PROcess
updated 13.6 years ago by ★ 3.6k • written 13.6 years ago by ▴ 250
0
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0
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836
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Coverage on GappedAlignment Pairs
Coverage PROcess Coverage PROcess
13.6 years ago Lakshmanan Iyer ▴ 50
0
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1
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1.3k
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xps scheme building
Annotation PROcess xps Annotation PROcess xps
updated 13.6 years ago by ★ 3.9k • written 13.6 years ago by ▴ 930
0
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3
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2.1k
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Non-Specific Filtering with "nsFilter" Question
probe genefilter PROcess probe genefilter PROcess
updated 13.6 years ago by 68k • written 13.6 years ago by ▴ 160
0
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1
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1.2k
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Problem in filtering of single color microarrray data using LIMMA
Microarray Preprocessing limma PROcess Microarray Preprocessing limma PROcess
updated 13.6 years ago by ▴ 130 • written 13.6 years ago by ▴ 60
0
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0
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1.4k
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importing iScan data into beadarray
PROcess beadarray PROcess beadarray
13.6 years ago Craig Johnson ▴ 20
0
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0
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1.0k
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pairwiseAlignment of PDB files to canonical protein structure
Alignment Biostrings PROcess Alignment Biostrings PROcess
13.6 years ago Gregory Ryslik ▴ 10
0
votes
6
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2.7k
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error installing Rgraphviz
Rgraphviz PROcess BiocInstaller Rgraphviz PROcess BiocInstaller
updated 13.6 years ago by ★ 8.2k • written 13.6 years ago by ▴ 10
0
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1
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1.4k
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miRNA and other small RNAs
miRNA Alignment Annotation PROcess miRNA Alignment Annotation PROcess
updated 13.7 years ago by ▴ 330 • written 13.7 years ago by ▴ 70
0
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1
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1.7k
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flowWorkspace transformation on FCS 3 data (Nikolas)
PROcess flowWorkspace PROcess flowWorkspace
updated 13.7 years ago by ▴ 30 • written 13.7 years ago by ▴ 240
0
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1
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2.0k
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deprecated head file for RBGL and compilation failure
graph RBGL PROcess graph RBGL PROcess
updated 13.7 years ago by 6.7k • written 13.7 years ago by ★ 13k
0
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0
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1.6k
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Illumina beadarray analysis with lumi
Normalization Preprocessing probe PROcess beadarray lumi Normalization Preprocessing probe
13.7 years ago Ahmet ZEHIR ▴ 50
0
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0
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1.7k
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flowWorkspace transformation on FCS 3 data
PROcess flowWorkspace PROcess flowWorkspace
13.7 years ago Nikolas ▴ 30
0
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0
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1.0k
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Can beadarray be use to analyze iScan raw data without perBeadFile.txt files?
PROcess beadarray PROcess beadarray
13.7 years ago Mike Smith ★ 6.6k
0
votes
1
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1.1k
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Problems easyRNASeq
Annotation PROcess easyRNASeq Annotation PROcess easyRNASeq
updated 13.7 years ago by ★ 1.2k • written 13.7 years ago by ▴ 10
0
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1
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1.1k
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Can beadarray be use to analyze iScan raw data without perBeadFile.txt files?
PROcess beadarray PROcess beadarray
updated 13.7 years ago by ★ 6.6k • written 13.8 years ago by ★ 13k
0
votes
7
replies
2.2k
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Install error affxparser for R 2.15
PROcess affxparser BiocInstaller PROcess affxparser BiocInstaller
updated 13.8 years ago by ★ 8.2k • written 13.8 years ago by ▴ 60
0
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0
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1.5k
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JOB: Research Associate in Statistical Epigenomics (London)
Cancer Ovarian PROcess Cancer Ovarian PROcess
13.8 years ago Andrew Teschendorff ▴ 60
0
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1
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1.6k
views
Checking RNAseq DESeq pipeline
Sequencing PROcess DESeq Sequencing PROcess DESeq
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 280
0
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1
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1.6k
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FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 13.9 years ago by ▴ 830 • written 13.9 years ago by ▴ 20
0
votes
0
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2.1k
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reading with lumi
Preprocessing PROcess lumi methylumi Preprocessing PROcess lumi methylumi
13.9 years ago Tim Triche ★ 4.2k
0
votes
3
replies
6.5k
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how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 3.5 years ago by • 0 • written 13.9 years ago by ★ 7.2k
0
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1
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1.2k
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[R] tapply for enormous (>2^31 row) matrices
PROcess PROcess
updated 13.9 years ago by ▴ 30 • written 13.9 years ago by ▴ 100
651 results • Page 4 of 14
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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