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processamplicons
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ProcessAmplicons using very little memory on big job?
edgeR
processamplicons
memory problem
5.8 years ago
sdalin
• 0
0
votes
0
replies
698
views
processAmplicons to match sequences 1 or 2 bases shorter than guides?
processamplicons
edgeR
updated 6.0 years ago by
shepherl
3.9k • written 6.0 years ago by
sdalin
• 0
0
votes
2
replies
1.6k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 15 months ago by
hyejo
• 0 • written 6.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
796
views
using the edgeR for sgRNA workflow with my own data
edger
sgrna
processamplicons
6.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.4k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 6.0 years ago by
sdalin
• 0 • written 7.2 years ago by
neggersjasper
• 0
0
votes
2
replies
1.2k
views
Error in processAmplicons "hairpin sequence length not with specified length"
processamplicons
updated 8.0 years ago by
Matthew Ritchie
▴ 1000 • written 8.0 years ago by
lucia.caceres
• 0
0
votes
2
replies
885
views
Error in processAmplicons "there are duplicate hairpin sequences"
processamplicons
8.0 years ago
lucia.caceres
• 0
1
vote
5
replies
1.2k
views
trying to change length of barcode
processamplicons
edger
barcode
8.1 years ago • updated 8.0 years ago
lucia.caceres
• 0
4
votes
4
replies
1.6k
views
edgeR:processAmplicons barcode match only 57% when it should be 100% -- I artificially inserted them -- are there other assumptions
edgeR
processamplicons
shrna
updated 8.5 years ago by
thomas.leete
• 0 • written 8.6 years ago by
Anne Deslattes Mays
▴ 10
2
votes
18
replies
3.2k
views
edgeR: processAmplicons crashes with large number of hairpins
edger
processamplicons
rstudio
updated 9.0 years ago by
Aaron Lun
★ 28k • written 9.0 years ago by
thomas.leete
• 0
10 results • Page
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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