Showing : crispr • reset
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Using edgeR to analyze Cripsr/Cas9 Screening data
edger processamplicons sgrna crispr
updated 3 months ago by • 0 • written 3.3 years ago by ★ 1.5k
2
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3
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226
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Independent filtering of NGS data
independentfiltering DESeq2 CRISPR
4 months ago Rubén • 0
6
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14
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480
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gRNAefficacy calculations in CRISPRseek
crisprseek crispr gRNAefficacy grna
updated 9 months ago by ★ 4.3k • written 9 months ago by ▴ 40
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Job: Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR functional genomics single cell gene regulatory networks Job
10 months ago bauer ▴ 10
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Job: Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics drug-discovery RNA-seq CRISPR Job
10 months ago yzhang • 0
0
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19
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609
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Help with using CRISPRseeker
CRISPR
updated 21 months ago by ★ 4.3k • written 22 months ago by ▴ 30
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723
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EdgeR: run processAmplicons without barcodes
EdgeR CRISPR Barcode processamplicons
updated 3.1 years ago by • 0 • written 4.3 years ago by • 0
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4
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1.1k
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Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr edger deseq deseq2
updated 3.6 years ago by ★ 26k • written 3.6 years ago by • 0
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2
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How to start CrispRVariants with fastq file starting point
R crispr fastq
4.6 years ago kfburbach • 0
0
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6
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902
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Manipulating random CRISPR sequences
r crispr
updated 5.1 years ago by ▴ 10 • written 5.7 years ago by • 0
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CRISPRseek R package: description of output fields that are unclear
crisprseek R CRISPR sgRNA
updated 5.4 years ago by ★ 4.3k • written 5.4 years ago by ▴ 20
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27
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1.8k
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CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek sgrna crispr cas9 R
5.7 years ago • updated 5.6 years ago alexgraehl ▴ 20
12 results • Page 1 of 1
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Comment: pathview: unable to use option "out.suffix" by 文祥 • 0
Add coment about sessionInfo R version 4.1.0 (2021-05-18) Platform: x86_64-apple-darwin17.0 (64-bit) Running under: macOS Big Sur 10.16 …
Comment: To retrieve the transcript from gff file with the longest isoform by Aneesha • 0
Okay, Thank You
Comment: how to plot multiple RLEs on same plot? by xiaofeiwang18266 ▴ 20
Thanks a lot!
Answer: Data input for aracne2regulon function in viper package by reef103 • 0
Hi @luna_p , I'm sorry I didn;t see this before. The error might be due to a lack of match between the genes in the network (regulators and…
Comment: deseq2 normalized data with heatmap by Kevin Blighe 3.1k
Hey Ian, specifically just for the heatmap and/or the clustering, we can additionally scale and center the `vsd` or `rld` data. The `scale…
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Answer: Difference in mixed test for fry vs mroast
A: DESeq2 variance transformation error and plot dispersion Estimate
Error in DESeqDataSet : some values in assay are not integers
A: Error in DESeqDataSet : some values in assay are not integers
A: Error in DESeqDataSet : some values in assay are not integers
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