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crispr
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
3.0 years ago
lpinello
• 0
0
votes
2
replies
1.7k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 20 months ago by
hyejo
• 0 • written 6.6 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.2k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
3.7 years ago
Rubén
• 0
6
votes
14
replies
2.3k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 4.1 years ago by
Julie Zhu
★ 4.3k • written 4.1 years ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
1.1k
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
4.2 years ago
bauer
▴ 10
0
votes
0
replies
1.1k
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
4.2 years ago
yzhang
• 0
0
votes
19
replies
2.5k
views
Help with using CRISPRseeker
CRISPR
updated 5.1 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
1.6k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 6.4 years ago by
sdalin
• 0 • written 7.6 years ago by
neggersjasper
• 0
0
votes
4
replies
2.4k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
1.5k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
7.9 years ago
kfburbach
• 0
0
votes
6
replies
2.0k
views
Manipulating random CRISPR sequences
r
crispr
updated 8.4 years ago by
mousheng xu
▴ 10 • written 9.0 years ago by
shane
• 0
1
vote
1
reply
1.5k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.7 years ago by
Julie Zhu
★ 4.3k • written 8.7 years ago by
alexgraehl
▴ 20
2
votes
27
replies
4.5k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
9.0 years ago • updated 8.9 years ago
alexgraehl
▴ 20
13 results • Page
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Answer: Annotation for EPICv2
by
James W. MacDonald
67k
The CpG you point out is in the intronic region of SHANK2, so will not be in any of the locations you have in your barplot. ![enter ima…
Comment: WGCNA
by
Lluís Revilla Sancho
▴ 750
This is a question of a package outside Bioconductor, it would be best to ask to the maintainer. But i think he moved to industry and the w…
Comment: dmpFinder for other objects
by
James W. MacDonald
67k
Yes, but you should probably use M-values instead of betas (convert using `logit2`). However, `dmpFinder` is just a way to allow people to…
Comment: Highly DE genes but small count difference within conditions
by
Michael Love
42k
This last problem, I don't know how to help with, I think there's high variability here and not many degrees of freedom to overcome that
Answer: [DESeq2] Introduce a bias in DESeq2
by
Michael Love
42k
This is often called an offset in statistical modeling. We have some support site posts about how to do this in DESeq2. Search for posts me…
Votes
Answer: Highly DE genes but small count difference within conditions
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
Trying to use enrichGO
Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet
Answer: dmpFinder for other objects
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