Showing : crispr • reset
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Using edgeR to analyze Cripsr/Cas9 Screening data
edger processamplicons sgrna crispr
updated 5 months ago by • 0 • written 3.5 years ago by ★ 1.5k
2
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3
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272
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Independent filtering of NGS data
independentfiltering DESeq2 CRISPR
7 months ago Rubén • 0
6
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14
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619
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gRNAefficacy calculations in CRISPRseek
crisprseek crispr gRNAefficacy grna
updated 12 months ago by ★ 4.3k • written 12 months ago by ▴ 40
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Job: Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR functional genomics single cell gene regulatory networks Job
13 months ago bauer ▴ 10
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Job: Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics drug-discovery RNA-seq CRISPR Job
13 months ago yzhang • 0
0
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19
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730
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Help with using CRISPRseeker
CRISPR
updated 2.0 years ago by ★ 4.3k • written 2.1 years ago by ▴ 30
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EdgeR: run processAmplicons without barcodes
EdgeR CRISPR Barcode processamplicons
updated 3.3 years ago by • 0 • written 4.5 years ago by • 0
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4
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1.2k
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Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr edger deseq deseq2
updated 3.9 years ago by ★ 27k • written 3.9 years ago by • 0
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2
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631
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How to start CrispRVariants with fastq file starting point
R crispr fastq
4.8 years ago kfburbach • 0
0
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6
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960
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Manipulating random CRISPR sequences
r crispr
updated 5.3 years ago by ▴ 10 • written 5.9 years ago by • 0
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771
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CRISPRseek R package: description of output fields that are unclear
crisprseek R CRISPR sgRNA
updated 5.6 years ago by ★ 4.3k • written 5.6 years ago by ▴ 20
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27
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1.9k
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CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek sgrna crispr cas9 R
6.0 years ago • updated 5.9 years ago alexgraehl ▴ 20
12 results • Page 1 of 1
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Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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