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crispr
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250
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
10 months ago
lpinello
• 0
0
votes
1
reply
782
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 16 months ago by
mridulchaudhary93
• 0 • written 4.4 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
445
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
18 months ago
Rubén
• 0
6
votes
14
replies
926
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 23 months ago by
Julie Zhu
★ 4.3k • written 23 months ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
378
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
24 months ago
bauer
▴ 10
0
votes
0
replies
431
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
24 months ago
yzhang
• 0
0
votes
19
replies
1.0k
views
Help with using CRISPRseeker
CRISPR
updated 2.9 years ago by
Julie Zhu
★ 4.3k • written 3.0 years ago by
sharvari gujja
▴ 30
0
votes
1
reply
916
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 4.2 years ago by
sdalin
• 0 • written 5.4 years ago by
neggersjasper
• 0
0
votes
4
replies
1.4k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 4.8 years ago by
Aaron Lun
★ 27k • written 4.8 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
766
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
5.7 years ago
kfburbach
• 0
0
votes
6
replies
1.1k
views
Manipulating random CRISPR sequences
r
crispr
updated 6.2 years ago by
mousheng xu
▴ 10 • written 6.8 years ago by
shane
• 0
1
vote
1
reply
902
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
alexgraehl
▴ 20
2
votes
27
replies
2.3k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
6.8 years ago
alexgraehl
▴ 20
13 results • Page
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Comment: unable to install.packages("spatialLIBD")
by
Leonardo Collado Torres
▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment
by
Martin Morgan
25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Delta._.43
▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Alejandro Reyes
★ 1.8k
Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…
Answer: spot- vs cell-level data access
by
Leonardo Collado Torres
▴ 1000
Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
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▴ 1000
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