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quasr error
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(QuasR Error) Error in checkForRemoteErrors(val) : one node produced an error: bowtie failed to perform the alignments
QuasR Error
6.4 years ago
tarek.mohamed
▴ 10
1
vote
2
replies
1.0k
views
QuasR error usign preprocessReads
quasr error
6.3 years ago
Paul Ríos
• 0
0
votes
5
replies
1.0k
views
package install error package is not available
quasr error
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
maedakus
▴ 10
0
votes
1
reply
958
views
Error: The specified genome ./data/BSgenome.Hsapiens.UCSC.hg19 does not have the extension of a fasta file (fa,fasta,fna)
quasr error
updated 6.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 6.2 years ago by
ezgi_can00
• 0
2
votes
4
replies
1.6k
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Question: qCount in QuasR for RNAseq quantification
quasr error
updated 6.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 6.3 years ago by
tarek.mohamed
▴ 10
0
votes
0
replies
572
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
5.4 years ago
guillaume.dachy
• 0
1
vote
0
replies
1.1k
views
QuasR - preprocessReads fails with a SRFilterResult error
quasr
quasr error
5.3 years ago
jlncrnt
▴ 10
1
vote
2
replies
677
views
Error in checkForRemoteErrors(val) : QuasR: can't pass alignment parameters
quasR
quasr error
alignmentparameters
quasr
3.5 years ago
Amer Ghalawinji
• 0
0
votes
2
replies
273
views
QuasR qQCReport error
QuasR qQCReport
QuasR error
Error in .normarg_totalsize(totalsize)
2.4 years ago
A.Singh
• 0
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Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
To add to the extensive discussion above, you may also want to have a look at the so-called UPC algorithm, available in the [package][1] `S…
Answer: How to best visualize multi-level transcriptomics experiment data?
by
Gordon Smyth
45k
> One way is to extract the differentially expressed genes with p.val = 0.05 and logFC = +/-1.0 I strongly recommend using FDR < 0.05 and…
Comment: Reading multiple data segments from FCS 3.0 file
by
Goldpanda
• 0
Is there a way to combine the fcs files back into a single file as individual data segments?
Answer: different results in DESeq2 when comparing groups in two ways
by
zohreh.fazelan
• 0
I appreciate your time and response.
Answer: Function Request for Rsubread or tximport: parsing command-line featureCounts ou
by
Gordon Smyth
45k
You can read command-line output from `featureCounts` by ``` library(edgeR) y <- readDGE( fcoutputfiles, columns=c(1,7) ) y$genes <- read.d…
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Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
A: coefficient not estimable (limma warning)
A: conceptual question about FDR, FDR adjusted p-value and q-value
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