Bioconductor Rcy3

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RCy3 Cytohubba

updated 4 months ago by alex.pico ▴ 20 • written 4 months ago by jzhan067 ▴ 10

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277

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Cytoscape RCy3 RCy

updated 4 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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847

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Network RCy3

updated 4 months ago by alex.pico ▴ 20 • written 4 months ago by David R ▴ 90

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1.2k

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Cytoscape RCy3 Networkvisualization WGCNA

11 months ago Ortega-C ▴ 10

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606

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RCy3

updated 15 months ago by alex.pico ▴ 20 • written 15 months ago by adR ▴ 30

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1.3k

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GEOquery CancerData limma RCy3 CancerInSilico

updated 2.5 years ago by Steve Lianoglou ★ 13k • written 2.5 years ago by Caitlin ▴ 50

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1.3k

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Cytoscape Pathways Wikipathways rWikiPathways RCy3

3.4 years ago Emilia ▴ 30

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738

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RCy3 Cytoscape R Newick Bioconductor

updated 3.4 years ago by alex.pico ▴ 20 • written 3.8 years ago by ellisjc • 0

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875

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rcy3

updated 3.4 years ago by alex.pico ▴ 20 • written 4.3 years ago by hanna226613 ▴ 10

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1.4k

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RCy3 Cytoscape Rgraphviz GOstats

5.0 years ago Matthew Thornton ▴ 350

10 results • Page 1 of 1

Recent ...

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

Comment: fgsea significant result by Chris • 0

Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…

Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0

Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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