Showing : rcy3 • reset
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
3 months ago Matthew Thornton ▴ 380
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1
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389
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 8 months ago by ▴ 20 • written 8 months ago by ▴ 90
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1.0k
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How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 8 months ago by ▴ 20 • written 8 months ago by ▴ 90
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1
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489
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Cytohubba in RCY3
RCy3 Cytohubba
updated 8 months ago by ▴ 20 • written 8 months ago by ▴ 10
3
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7
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1.5k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
16 months ago Ortega-C ▴ 10
1
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1
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773
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how to call an app from Cytoscape using R?
RCy3
updated 19 months ago by ▴ 20 • written 19 months ago by ▴ 30
2
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3
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1.5k
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Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 2.8 years ago by ★ 13k • written 2.8 years ago by ▴ 50
1
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2
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991
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RCy3 Cytoscape package question
rcy3
updated 3.7 years ago by ▴ 20 • written 4.7 years ago by ▴ 10
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3
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
3.8 years ago • updated 3.7 years ago Emilia ▴ 40
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 3.7 years ago by ▴ 20 • written 4.1 years ago by • 0
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4
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1.5k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
5.3 years ago Matthew Thornton ▴ 380
11 results • Page 1 of 1
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Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
I request the post here, so not a problem.
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by micolak0115 • 0
Thanks for the advice Michael. I will try this with my future test datasets.
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by micolak0115 • 0
Hi James, I will try to leave only relevant questions on bioconductor forum hereinafter. Thanks for the note. Cheers, Alan
Comment: SingleR Label.Ont by Stepah • 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Votes
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic
Answer: Help with design matrix for RNA-seq data using edgeR
Answer: Should tSNE from biol. replicates look alike?
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