Showing : rcy3 • reset
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
17 months ago • updated 16 months ago Arindam ▴ 80
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2
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
21 months ago Matthew Thornton ▴ 390
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812
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 2.1 years ago by ▴ 30 • written 2.2 years ago by ▴ 90
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1.8k
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How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 2.1 years ago by ▴ 30 • written 2.2 years ago by ▴ 90
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1
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1.5k
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Cytohubba in RCY3
RCy3 Cytohubba
updated 2.1 years ago by ▴ 30 • written 2.2 years ago by ▴ 10
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7
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2.8k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.8 years ago Ortega-C ▴ 10
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1.4k
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how to call an app from Cytoscape using R?
RCy3
updated 3.1 years ago by ▴ 30 • written 3.1 years ago by ▴ 40
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3
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2.4k
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Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 4.3 years ago by ★ 13k • written 4.3 years ago by ▴ 50
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1.6k
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RCy3 Cytoscape package question
rcy3
updated 5.2 years ago by ▴ 30 • written 6.1 years ago by ▴ 10
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3
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
5.2 years ago Emilia ▴ 40
0
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1
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1.2k
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 5.2 years ago by ▴ 30 • written 5.6 years ago by • 0
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4
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.8 years ago Matthew Thornton ▴ 390
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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