Showing : rcy3 • reset
1
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
17 months ago • updated 16 months ago Arindam ▴ 80
2
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2
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1.4k
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Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(paste("networks", net.suid, "tables", tbl, sep = "/"), : object 're…
RCy3
21 months ago Matthew Thornton ▴ 390
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1
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797
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Going back to default settings in RCy3
Cytoscape RCy3 RCy
updated 2.1 years ago by ▴ 30 • written 2.1 years ago by ▴ 90
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1
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1.7k
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 2.1 years ago by ▴ 30 • written 2.1 years ago by ▴ 90
1
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1
reply
1.4k
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Cytohubba in RCY3
RCy3 Cytohubba
updated 2.1 years ago by ▴ 30 • written 2.1 years ago by ▴ 10
3
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7
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2.8k
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"Degree values are the same for all nodes in a network imported from WGCNA to Cytoscape using RCy3. Seeking insights and potential causes."
Cytoscape RCy3 Networkvisualization WGCNA
2.7 years ago Ortega-C ▴ 10
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1
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1.4k
views
how to call an app from Cytoscape using R?
RCy3
updated 3.1 years ago by ▴ 30 • written 3.1 years ago by ▴ 40
2
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3
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2.4k
views
Aggregating genes from multiple GSE's, ranking them, then building a PPI network.
GEOquery CancerData limma RCy3 CancerInSilico
updated 4.2 years ago by ★ 13k • written 4.2 years ago by ▴ 50
1
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2
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1.6k
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RCy3 Cytoscape package question
rcy3
updated 5.1 years ago by ▴ 30 • written 6.1 years ago by ▴ 10
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3
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2.0k
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
5.2 years ago • updated 5.1 years ago Emilia ▴ 40
0
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1
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1.2k
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Importing Newick trees in Cytoscape by conversion to igraph via RCy3
RCy3 Cytoscape R Newick Bioconductor
updated 5.1 years ago by ▴ 30 • written 5.6 years ago by • 0
3
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4
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2.1k
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Exporting graphNEL into Cytoscape using RCy3 fails with 'arguments imply differing number of rows'
RCy3 Cytoscape Rgraphviz GOstats
6.7 years ago Matthew Thornton ▴ 390
12 results • Page 1 of 1
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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0
the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…
Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0
Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…
Comment: DiffBind plot.profile error by a2sahaaaq2c • 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
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Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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