Showing : read counting • reset
3
votes
2
replies
1.2k
views
counting the sequencing reads in 10kb regions on a genome-wide scale
read counting CNV rsamtools
updated 7.2 years ago by 68k • written 7.2 years ago by ▴ 670
0
votes
1
reply
1.4k
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featureCounts : limits on multioverlap (option -O)
featurecounts read counting
updated 7.2 years ago by 52k • written 7.2 years ago by • 0
1
vote
4
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2.6k
views
DiffBind error with dba.count after update
diffbind read counting warning message chromatin atac-seq
updated 7.5 years ago by ▴ 670 • written 7.5 years ago by • 0
1
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4
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2.5k
views
Gviz sashimi read count
Gviz sashimi sashimi plots read counting bam
updated 8.2 years ago by ▴ 750 • written 8.2 years ago by • 0
4
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3
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3.3k
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Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting
8.9 years ago ErickF ▴ 40
1
vote
12
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4.5k
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Problem with summarizeOverlaps function
genomicalignments read counting
9.7 years ago kgorczak ▴ 10
6 results • Page 1 of 1
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Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0
I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…
Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k
Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …
Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0
It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…
Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k
You neglected to add the code you use to generate the heatmap.
Answer: Error in readCodelinkSet function by James W. MacDonald 68k
Please don't cross-post to Biostars. Either post here or there, but not both.
Votes
Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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