Showing : read counting • reset
1
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12
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4.5k
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Problem with summarizeOverlaps function
genomicalignments read counting
9.7 years ago kgorczak ▴ 10
1
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4
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2.5k
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Gviz sashimi read count
Gviz sashimi sashimi plots read counting bam
updated 8.1 years ago by ▴ 750 • written 8.1 years ago by • 0
1
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4
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2.6k
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DiffBind error with dba.count after update
diffbind read counting warning message chromatin atac-seq
updated 7.5 years ago by ▴ 670 • written 7.5 years ago by • 0
4
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3
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3.2k
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Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting
8.8 years ago ErickF ▴ 40
3
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2
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1.2k
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counting the sequencing reads in 10kb regions on a genome-wide scale
read counting CNV rsamtools
updated 7.1 years ago by 68k • written 7.1 years ago by ▴ 670
0
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1
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1.4k
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featureCounts : limits on multioverlap (option -O)
featurecounts read counting
updated 7.2 years ago by 52k • written 7.2 years ago by • 0
6 results • Page 1 of 1
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Comment: Intepretation of results by Tom • 0
[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…
Comment: Gene Ontology (GO) Analysis by Tom • 0
[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…
Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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