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Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
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Bioc204
13 months ago • updated 11 months ago
shepherl
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14 months ago • updated 13 months ago
shepherl
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23 months ago
shepherl
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Bioconductor
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shepherl
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shepherl
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2.0 years ago • updated 23 months ago
shepherl
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Bioconductor Long-term Contribution Award
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24 months ago • updated 23 months ago
shepherl
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shepherl
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Bioc2022
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shepherl
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Bioconductor
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shepherl
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5.0 years ago • updated 4.9 years ago
shepherl
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28 results • Page
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Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
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janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
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James W. MacDonald
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Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
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Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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