9 months ago • updated 7 months ago
shepherl
4.1k
1
vote
0
replies
641
views
1
vote
0
replies
518
views
10 months ago
shepherl
4.1k
0
votes
0
replies
511
views
19 months ago
shepherl
4.1k
1
vote
0
replies
787
views
19 months ago
shepherl
4.1k
0
votes
0
replies
665
views
19 months ago
shepherl
4.1k
0
votes
0
replies
782
views
20 months ago • updated 19 months ago
shepherl
4.1k
0
votes
0
replies
730
views
20 months ago • updated 19 months ago
shepherl
4.1k
0
votes
0
replies
696
views
20 months ago • updated 19 months ago
shepherl
4.1k
0
votes
1
reply
890
views
written 2.7 years ago by
shepherl
4.1k
1
vote
2
replies
1.3k
views
written 2.8 years ago by
shepherl
4.1k
0
votes
0
replies
755
views
2.7 years ago
shepherl
4.1k
0
votes
0
replies
785
views
2.7 years ago
shepherl
4.1k
0
votes
0
replies
743
views
2.7 years ago
shepherl
4.1k
0
votes
0
replies
819
views
2.7 years ago
shepherl
4.1k
0
votes
0
replies
829
views
2.8 years ago
shepherl
4.1k
0
votes
0
replies
976
views
3.6 years ago
shepherl
4.1k
0
votes
0
replies
893
views
3.6 years ago
shepherl
4.1k
0
votes
0
replies
941
views
3.6 years ago
shepherl
4.1k
1
vote
0
replies
905
views
3.6 years ago
shepherl
4.1k
0
votes
0
replies
1.0k
views
3.7 years ago
shepherl
4.1k
0
votes
0
replies
1.0k
views
3.7 years ago
shepherl
4.1k
0
votes
0
replies
925
views
3.7 years ago
shepherl
4.1k
0
votes
0
replies
991
views
4.6 years ago
shepherl
4.1k
0
votes
0
replies
991
views
4.6 years ago
shepherl
4.1k
0
votes
0
replies
981
views
4.6 years ago
shepherl
4.1k
0
votes
0
replies
983
views
4.6 years ago
shepherl
4.1k
0
votes
0
replies
903
views
4.6 years ago
shepherl
4.1k
4
votes
1
reply
4.0k
views
4.7 years ago • updated 4.6 years ago
shepherl
4.1k
Recent ...
Replies
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
52k
To compute CPM values from edgeR:
```
y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status)
y <- …
Comment: edgeR + tximport: calcNormFactors and the usage of offsets
by
Gordon Smyth
52k
Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.
Comment: edgeR + tximport: calcNormFactors and the usage of offsets
by
Andre
•
0
But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…
Comment: DESeq error: counts matrix should be numeric, currently it has mode: character
by
Kucsera
•
0
After applying your suggestion, the following error pops up:
```
Error in mde(x) : 'list' object cannot be coerced to type 'double'
```
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character
by
ATpoint
★
4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do:
`mo…
Votes
Awards
• All
Popular Question to
shepherl
4.1k
Popular Question to
Gordon Smyth
52k
Popular Question to
rohitsatyam102
▴
20
Popular Question to
Hervé Pagès
16k
Locations
• All
Macao, 19 minutes ago
Pakistan, 52 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
The city by the bay, 5 hours ago
Portugal, 6 hours ago
Macao, 19 minutes ago
Pakistan, 52 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
The city by the bay, 5 hours ago
Portugal, 6 hours ago
Traffic: 573 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6