Bioconductor Recount

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1.3k

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recount recountWorkflow recount3

updated 12 months ago by Leonardo Collado Torres ★ 1.0k • written 17 months ago by Max Bone • 0

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799

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recount recount3

updated 12 months ago by Leonardo Collado Torres ★ 1.0k • written 16 months ago by franceschini.gianmarco • 0

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691

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recount recountWorkflow recount3

updated 12 months ago by Leonardo Collado Torres ★ 1.0k • written 16 months ago by dml • 0

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473

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recount

updated 8 months ago by ATpoint ★ 4.1k • written 8 months ago by urwah ▴ 10

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DESeq2 recount GTEx TCGA recount3

updated 12 months ago by ATpoint ★ 4.1k • written 12 months ago by David ▴ 20

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214

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recount3 recount CCLE

updated 3 months ago by Leonardo Collado Torres ★ 1.0k • written 3 months ago by António Miguel de Jesus Domingues ▴ 510

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174

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recount3 recount

12 weeks ago Max Bone • 0

7 results • Page 1 of 1

Recent ...

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…

Answer: Once again a "Model matrix not full rank" by James W. MacDonald 65k

The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …

Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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Popular Question to gene_bioconductor ▴ 10

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