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regioneR
•
reset
0
votes
0
replies
589
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr
regioneR
gkmSVM
2.4 years ago
rohitsatyam102
▴ 20
0
votes
1
reply
550
views
need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR
granges
iranges
updated 2.6 years ago by
bernatgel
▴ 150 • written 3.1 years ago by
Angel Liang
• 0
0
votes
1
reply
478
views
behaviour of regioneR permTest function
regioneR
updated 3.7 years ago by
bernatgel
▴ 150 • written 3.7 years ago by
shoko
• 0
0
votes
3
replies
633
views
Replacement error in PermTest
regioneR
3.9 years ago
AlejandroMA
• 0
1
vote
1
reply
425
views
regioneR meanInRegions to evaluate mutation accumulation
regioneR
updated 4.1 years ago by
bernatgel
▴ 150 • written 4.1 years ago by
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
1
reply
441
views
Is localZScore function of regioneR mask-aware?
regioneR
updated 4.1 years ago by
bernatgel
▴ 150 • written 4.1 years ago by
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
495
views
overlapPermTest will not allow randomizing from MASKED hg19
regioner
4.9 years ago
peds09
• 0
0
votes
0
replies
625
views
permTest plot Evobs bar moves and it should not
regioner
permtest
5.2 years ago
linuxborg2
• 0
2
votes
5
replies
1.4k
views
permutation test on one set of data to get p-value of highest peaks. permTest? How?
regioneR
permTest
5.2 years ago
linuxborg2
• 0
2
votes
1
reply
921
views
RegioneR perm test result Plot- how is y axis calculated
regioneR
updated 5.6 years ago by
bernatgel
▴ 150 • written 5.6 years ago by
gonzalpk
▴ 10
6
votes
5
replies
2.6k
views
Error running the function permTest
regioner
overlappingpeaks
updated 6.1 years ago by
bernatgel
▴ 150 • written 6.1 years ago by
tharveshliyakat
▴ 10
2
votes
1
reply
965
views
Conflicting results in 'overlapPermTest' function from regioneR package
regioneR
updated 6.4 years ago by
bernatgel
▴ 150 • written 6.4 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
1
reply
941
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle
regioner
seqinr
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
Dimitris Polychronopoulos
▴ 80
0
votes
1
reply
1.1k
views
regioneR: error when verbose=TRUE
regioneR
updated 6.9 years ago by
bgel
▴ 30 • written 6.9 years ago by
andreucat91
• 0
2
votes
5
replies
1.0k
views
Sample code doesn't seem to be working on fresh install of regioneR
regioner
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
rcavalca
▴ 140
0
votes
1
reply
764
views
width(GRanges) increases after randomizeRegions(..) in package RegioneR
genomicranges
regioneR
width
updated 7.3 years ago by
bernatgel
▴ 150 • written 7.3 years ago by
Ludo Pagie
▴ 40
6
votes
1
reply
1.5k
views
Retrieving Regions from hg38 of the same GC content and length with a list of elements
regioneR
GRanges
GCcontent
updated 7.5 years ago by
bernatgel
▴ 150 • written 7.5 years ago by
Dimitris Polychronopoulos
▴ 80
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Comment: Ensembl plants at annotationHub?
by
Bruno
• 0
Hi Guido, Thanks for your fast reply the error was as said in my question "Annotation must be a GRanges object", when I tried to use the a…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 3.6k
You did not show the code that resulted in that error, so we have to guess what you did. Yet, the [R package][1] `Signac` contains the func…
Comment: Query regarding phyloseq object construct with QIIME output
by
betterwound
• 0
Thanks for sharing the code [geometry dash](https://geometrydash.io/)
Answer: Ensembl plants at annotationHub?
by
Bruno
• 0
Hi Johannes, First, thank you so much for providing these annotations for the community. We feel often a bit left off in the plant commu…
Comment: DESeq2 on multilevel design variable
by
swbarnes2
★ 1.2k
Did you relevel before or after calling DESeq?
Votes
Comment: Ensembl plants at annotationHub?
Answer: DESeq2 on multilevel design variable
Comment: Sudden error with KEGG analysis using gometh
Comment: Sudden error with KEGG analysis using gometh
Answer: Although I successfully installed the package "simpleaffy'' , I cannot library i
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