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regioner
•
reset
0
votes
0
replies
356
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr
regioneR
gkmSVM
20 months ago
rohitsatyam102
▴ 20
0
votes
1
reply
337
views
need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR
granges
iranges
updated 22 months ago by
bernatgel
▴ 140 • written 2.3 years ago by
Angel Liang
• 0
0
votes
1
reply
357
views
behaviour of regioneR permTest function
regioneR
updated 2.9 years ago by
bernatgel
▴ 140 • written 2.9 years ago by
shoko
• 0
0
votes
3
replies
452
views
Replacement error in PermTest
regioneR
3.1 years ago
AlejandroMA
• 0
1
vote
1
reply
336
views
regioneR meanInRegions to evaluate mutation accumulation
regioneR
updated 3.3 years ago by
bernatgel
▴ 140 • written 3.3 years ago by
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
1
reply
338
views
Is localZScore function of regioneR mask-aware?
regioneR
updated 3.3 years ago by
bernatgel
▴ 140 • written 3.3 years ago by
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
0
replies
396
views
overlapPermTest will not allow randomizing from MASKED hg19
regioner
4.1 years ago
peds09
• 0
0
votes
0
replies
496
views
permTest plot Evobs bar moves and it should not
regioner
permtest
4.4 years ago
linuxborg2
• 0
2
votes
5
replies
975
views
permutation test on one set of data to get p-value of highest peaks. permTest? How?
regioneR
permTest
4.4 years ago
linuxborg2
• 0
2
votes
1
reply
755
views
RegioneR perm test result Plot- how is y axis calculated
regioneR
updated 4.8 years ago by
bernatgel
▴ 140 • written 4.8 years ago by
gonzalpk
▴ 10
6
votes
5
replies
2.2k
views
Error running the function permTest
regioner
overlappingpeaks
updated 5.3 years ago by
bernatgel
▴ 140 • written 5.3 years ago by
tharveshliyakat
▴ 10
2
votes
1
reply
811
views
Conflicting results in 'overlapPermTest' function from regioneR package
regioneR
updated 5.6 years ago by
bernatgel
▴ 140 • written 5.6 years ago by
Vinicius Henrique da Silva
▴ 40
1
vote
1
reply
731
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle
regioner
seqinr
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
Dimitris Polychronopoulos
▴ 70
0
votes
1
reply
956
views
regioneR: error when verbose=TRUE
regioneR
updated 6.1 years ago by
bgel
▴ 30 • written 6.1 years ago by
andreucat91
• 0
2
votes
5
replies
865
views
Sample code doesn't seem to be working on fresh install of regioneR
regioner
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
rcavalca
▴ 140
0
votes
1
reply
685
views
width(GRanges) increases after randomizeRegions(..) in package RegioneR
genomicranges
regioneR
width
updated 6.5 years ago by
bernatgel
▴ 140 • written 6.5 years ago by
Ludo Pagie
▴ 40
6
votes
1
reply
1.3k
views
Retrieving Regions from hg38 of the same GC content and length with a list of elements
regioneR
GRanges
GCcontent
updated 6.7 years ago by
bernatgel
▴ 140 • written 6.7 years ago by
Dimitris Polychronopoulos
▴ 70
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