Showing : regioner • reset
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356
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sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
20 months ago rohitsatyam102 ▴ 20
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1
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337
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need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR granges iranges
updated 22 months ago by ▴ 140 • written 2.3 years ago by • 0
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1
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357
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behaviour of regioneR permTest function
regioneR
updated 2.9 years ago by ▴ 140 • written 2.9 years ago by • 0
0
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3
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452
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Replacement error in PermTest
regioneR
3.1 years ago AlejandroMA • 0
1
vote
1
reply
336
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regioneR meanInRegions to evaluate mutation accumulation
regioneR
updated 3.3 years ago by ▴ 140 • written 3.3 years ago by ▴ 40
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1
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338
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Is localZScore function of regioneR mask-aware?
regioneR
updated 3.3 years ago by ▴ 140 • written 3.3 years ago by ▴ 40
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0
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396
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overlapPermTest will not allow randomizing from MASKED hg19
regioner
4.1 years ago peds09 • 0
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0
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496
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permTest plot Evobs bar moves and it should not
regioner permtest
4.4 years ago linuxborg2 • 0
2
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5
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975
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permutation test on one set of data to get p-value of highest peaks. permTest? How?
regioneR permTest
4.4 years ago linuxborg2 • 0
2
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1
reply
755
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RegioneR perm test result Plot- how is y axis calculated
regioneR
updated 4.8 years ago by ▴ 140 • written 4.8 years ago by ▴ 10
6
votes
5
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2.2k
views
Error running the function permTest
regioner overlappingpeaks
updated 5.3 years ago by ▴ 140 • written 5.3 years ago by ▴ 10
2
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1
reply
811
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Conflicting results in 'overlapPermTest' function from regioneR package
regioneR
updated 5.6 years ago by ▴ 140 • written 5.6 years ago by ▴ 40
1
vote
1
reply
731
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Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle regioner seqinr
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 70
0
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1
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956
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regioneR: error when verbose=TRUE
regioneR
updated 6.1 years ago by ▴ 30 • written 6.1 years ago by • 0
2
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5
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865
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Sample code doesn't seem to be working on fresh install of regioneR
regioner
updated 6.3 years ago by 25k • written 6.3 years ago by ▴ 140
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1
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685
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width(GRanges) increases after randomizeRegions(..) in package RegioneR
genomicranges regioneR width
updated 6.5 years ago by ▴ 140 • written 6.5 years ago by ▴ 40
6
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1
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1.3k
views
Retrieving Regions from hg38 of the same GC content and length with a list of elements
regioneR GRanges GCcontent
updated 6.7 years ago by ▴ 140 • written 6.7 years ago by ▴ 70
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