Showing : regioneR • reset
6
votes
1
reply
1.8k
views
Retrieving Regions from hg38 of the same GC content and length with a list of elements
regioneR GRanges GCcontent
updated 8.4 years ago by ▴ 150 • written 8.4 years ago by ▴ 80
6
votes
5
replies
3.1k
views
Error running the function permTest
regioner overlappingpeaks
updated 7.0 years ago by ▴ 150 • written 7.0 years ago by ▴ 10
2
votes
5
replies
1.9k
views
permutation test on one set of data to get p-value of highest peaks. permTest? How?
regioneR permTest
6.1 years ago linuxborg2 • 0
2
votes
5
replies
1.3k
views
Sample code doesn't seem to be working on fresh install of regioneR
regioner
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 140
2
votes
1
reply
1.2k
views
Conflicting results in 'overlapPermTest' function from regioneR package
regioneR
updated 7.3 years ago by ▴ 150 • written 7.3 years ago by ▴ 40
2
votes
1
reply
1.2k
views
RegioneR perm test result Plot- how is y axis calculated
regioneR
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by ▴ 10
1
vote
1
reply
1.2k
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle regioner seqinr
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 80
1
vote
1
reply
651
views
regioneR meanInRegions to evaluate mutation accumulation
regioneR
updated 5.0 years ago by ▴ 150 • written 5.0 years ago by ▴ 40
0
votes
0
replies
655
views
overlapPermTest will not allow randomizing from MASKED hg19
regioner
5.8 years ago peds09 • 0
0
votes
1
reply
1.1k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr regioneR gkmSVM
updated 5 months ago by • 0 • written 3.4 years ago by ▴ 20
0
votes
1
reply
958
views
width(GRanges) increases after randomizeRegions(..) in package RegioneR
genomicranges regioneR width
updated 8.2 years ago by ▴ 150 • written 8.2 years ago by ▴ 40
0
votes
1
reply
1.3k
views
regioneR: error when verbose=TRUE
regioneR
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by • 0
0
votes
0
replies
831
views
permTest plot Evobs bar moves and it should not
regioner permtest
6.1 years ago linuxborg2 • 0
0
votes
1
reply
654
views
Is localZScore function of regioneR mask-aware?
regioneR
updated 5.0 years ago by ▴ 150 • written 5.0 years ago by ▴ 40
0
votes
3
replies
888
views
Replacement error in PermTest
regioneR
4.8 years ago AlejandroMA • 0
0
votes
1
reply
678
views
behaviour of regioneR permTest function
regioneR
updated 4.6 years ago by ▴ 150 • written 4.6 years ago by • 0
0
votes
1
reply
895
views
need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR granges iranges
updated 3.6 years ago by ▴ 150 • written 4.0 years ago by • 0
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