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riboseqr
•
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0
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0
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700
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor
riboSeqR
12 months ago
Javier
• 0
0
votes
0
replies
482
views
Reference span vs. width of read in riboseqR
riboSeqR
4.0 years ago
ni2239
• 0
0
votes
1
reply
540
views
riboSeqR readRibodata fail in IRanges
riboSeqR
4.6 years ago
Hui.Pan
• 0
0
votes
2
replies
929
views
aroundPromoter function in RiboSeqR gives error
riboseqr
5.5 years ago
amir.mahboubi.79
• 0
2
votes
3
replies
1.1k
views
Problem in reading .bam files (aligned to transcriptome) with ribofileCR function
R
riboseqr
ribosome profiling
6.2 years ago
bsad
• 0
0
votes
3
replies
1.4k
views
Error in frameCounting using riboSeqR
riboseq
R
riboseqr
6.7 years ago
yingyingguo0228
• 0
1
vote
2
replies
1.6k
views
error in frameCounting in riboSeqR
riboseqr
ribosome profiling
updated 8.2 years ago by
Thomas J Hardcastle
▴ 180 • written 8.2 years ago by
alper.celik
• 0
0
votes
2
replies
1.6k
views
error in callingFrames : riboSeqR
R
riboseqr
ribosome profiling
8.5 years ago
ohtack9
• 0
1
vote
3
replies
1.2k
views
error in loading Riboseq
software error
riboseqr
8.5 years ago
yyu
• 0
1
vote
0
replies
1.6k
views
Job:
PhD Student in Computational Biology
differential gene expression
rnaseq
riboseqr
computational biology
Job
8.6 years ago
Bernd Fischer
▴ 550
0
votes
1
reply
1.1k
views
riboSeqR: legend in plotFS
riboseqr
updated 9.0 years ago by
Thomas J Hardcastle
▴ 180 • written 9.0 years ago by
antonvila.s
• 0
0
votes
0
replies
930
views
legend in plotFS
riboseqr
9.0 years ago
antonvila.s
• 0
0
votes
1
reply
1.0k
views
riboSeqR: plotTranscript error
riboSeqR
updated 9.1 years ago by
Thomas J Hardcastle
▴ 180 • written 9.1 years ago by
antonvila.s
• 0
0
votes
0
replies
922
views
riboSeqR: questions on plotTranscript function
riboseqr
9.1 years ago
antonvila.s
• 0
0
votes
1
reply
1.1k
views
riboSeqR: plotTranscript function not showing coverage
riboseqr
updated 9.2 years ago by
Thomas J Hardcastle
▴ 180 • written 9.2 years ago by
antonvila.s
• 0
0
votes
1
reply
1.2k
views
riboSeqR: criteria used to determine reading frames
riboSeqR
updated 9.2 years ago by
Thomas J Hardcastle
▴ 180 • written 9.2 years ago by
antonvila.s
• 0
0
votes
0
replies
1.3k
views
riboSeqR: interpret plots generated by plotTranscript function
riboSeqR
plotTranscript function
9.5 years ago
Laura.Fancello
• 0
1
vote
3
replies
1.6k
views
RiboSeqR package input file format
riboSeqR
updated 9.6 years ago by
Thomas J Hardcastle
▴ 180 • written 9.6 years ago by
Laura.Fancello
• 0
18 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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