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riboseqr
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0
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3
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1.4k
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Error in frameCounting using riboSeqR
riboseq
R
riboseqr
6.7 years ago
yingyingguo0228
• 0
1
vote
2
replies
1.6k
views
error in frameCounting in riboSeqR
riboseqr
ribosome profiling
updated 8.2 years ago by
Thomas J Hardcastle
▴ 180 • written 8.2 years ago by
alper.celik
• 0
0
votes
1
reply
1.1k
views
riboSeqR: legend in plotFS
riboseqr
updated 9.0 years ago by
Thomas J Hardcastle
▴ 180 • written 9.0 years ago by
antonvila.s
• 0
1
vote
3
replies
1.6k
views
RiboSeqR package input file format
riboSeqR
updated 9.6 years ago by
Thomas J Hardcastle
▴ 180 • written 9.6 years ago by
Laura.Fancello
• 0
0
votes
1
reply
1.0k
views
riboSeqR: plotTranscript error
riboSeqR
updated 9.1 years ago by
Thomas J Hardcastle
▴ 180 • written 9.1 years ago by
antonvila.s
• 0
0
votes
2
replies
1.6k
views
error in callingFrames : riboSeqR
R
riboseqr
ribosome profiling
8.5 years ago
ohtack9
• 0
0
votes
1
reply
1.2k
views
riboSeqR: criteria used to determine reading frames
riboSeqR
updated 9.2 years ago by
Thomas J Hardcastle
▴ 180 • written 9.2 years ago by
antonvila.s
• 0
0
votes
1
reply
1.1k
views
riboSeqR: plotTranscript function not showing coverage
riboseqr
updated 9.2 years ago by
Thomas J Hardcastle
▴ 180 • written 9.2 years ago by
antonvila.s
• 0
0
votes
1
reply
541
views
riboSeqR readRibodata fail in IRanges
riboSeqR
4.6 years ago
Hui.Pan
• 0
0
votes
0
replies
482
views
Reference span vs. width of read in riboseqR
riboSeqR
4.0 years ago
ni2239
• 0
0
votes
0
replies
703
views
package ‘riboSeqR’ is not available for this version of R
Bioconductor
riboSeqR
12 months ago
Javier
• 0
0
votes
0
replies
1.3k
views
riboSeqR: interpret plots generated by plotTranscript function
riboSeqR
plotTranscript function
9.5 years ago
Laura.Fancello
• 0
0
votes
0
replies
922
views
riboSeqR: questions on plotTranscript function
riboseqr
9.2 years ago
antonvila.s
• 0
0
votes
0
replies
930
views
legend in plotFS
riboseqr
9.0 years ago
antonvila.s
• 0
1
vote
0
replies
1.6k
views
Job:
PhD Student in Computational Biology
differential gene expression
rnaseq
riboseqr
computational biology
Job
8.6 years ago
Bernd Fischer
▴ 550
1
vote
3
replies
1.2k
views
error in loading Riboseq
software error
riboseqr
8.5 years ago
yyu
• 0
2
votes
3
replies
1.1k
views
Problem in reading .bam files (aligned to transcriptome) with ribofileCR function
R
riboseqr
ribosome profiling
6.2 years ago
bsad
• 0
0
votes
2
replies
930
views
aroundPromoter function in RiboSeqR gives error
riboseqr
5.5 years ago
amir.mahboubi.79
• 0
18 results • Page
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Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Answer: fgsea significant result
by
ATpoint
★ 4.1k
Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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